PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK20180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family TALE
Protein Properties Length: 492aa    MW: 55080.6 Da    PI: 6.5957
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK20180.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-094154521954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +e+  LA+++gL+++qV++WF N R +
  PK20180.1 415 FEHflHPYPNDSEKLMLASQTGLSKNQVSNWFINARVR 452
                664459******************************88 PP

2BELL97.51.1e-31277348172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                e+qe q k +kL+slle V+ rY++y++q++ ++++Fe++ag ++ak+Yt+lAl+a+SrhF +L+da++++i
  PK20180.1 277 EKQESQLKMTKLISLLEDVEGRYEKYYHQMEEIMGAFEMIAGSEAAKSYTALALQAMSRHFCSLRDAVVSRI 348
                689*****************************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-28205346IPR006563POX domain
PfamPF075261.1E-37210344IPR006563POX domain
PROSITE profilePS5007111.953393456IPR001356Homeobox domain
SMARTSM003897.2E-10396460IPR001356Homeobox domain
CDDcd000869.76E-12396457No hitNo description
Gene3DG3DSA:1.10.10.603.6E-27401462IPR009057Homeodomain-like
SuperFamilySSF466891.45E-17401464IPR009057Homeodomain-like
PfamPF059203.4E-17413452IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MVSQDSPPHP HPHPDTNNIV HQFLISDPII TTQTQFQNQH FNAYGSNYRG HSITYPPPHL  60
GIIPGIQSLG VGERMSRSMD LVQAPPTTDD SQLSHTRRLM DLLGASNDNN YHAQSHNSQS  120
QSQSQRLSLS LGSHMVVPSV EYRQRSFNSD LLTPAYMVSG EEQVREACNP PGLEHVNDNY  180
PFSGSSIASS SASLNRSYST LYGADTLSTV ISHSRYLKPT QSLLDEIVNV GGKAVEMSNE  240
KYVDKLLRGN RRGGGRGLSL SSELRAEFCN SGVVSPEKQE SQLKMTKLIS LLEDVEGRYE  300
KYYHQMEEIM GAFEMIAGSE AAKSYTALAL QAMSRHFCSL RDAVVSRINV EKRKLSHDLP  360
KISTGLSQLS LFDRETRNNR IPLQHLGMIQ NQRQAWRPIR GLPETSVAIL RAWLFEHFLH  420
PYPNDSEKLM LASQTGLSKN QVSNWFINAR VRLWKPMIEE MYKEEFGDSS EDSNPFAGGS  480
MAGEGVTDHE ED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16402460563Homeobox protein Meis2
3k2a_B4e-16402460563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010110018.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-107BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A2P5EZK40.0A0A2P5EZK4_TREOI; Homeodomain transcription factor
STRINGXP_010110018.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-100BEL1-like homeodomain 11