PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK20180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | TALE | ||||||||
Protein Properties | Length: 492aa MW: 55080.6 Da PI: 6.5957 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.5 | 1.3e-09 | 415 | 452 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gL+++qV++WF N R + PK20180.1 415 FEHflHPYPNDSEKLMLASQTGLSKNQVSNWFINARVR 452 664459******************************88 PP | |||||||
2 | BELL | 97.5 | 1.1e-31 | 277 | 348 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qe q k +kL+slle V+ rY++y++q++ ++++Fe++ag ++ak+Yt+lAl+a+SrhF +L+da++++i PK20180.1 277 EKQESQLKMTKLISLLEDVEGRYEKYYHQMEEIMGAFEMIAGSEAAKSYTALALQAMSRHFCSLRDAVVSRI 348 689*****************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.0E-28 | 205 | 346 | IPR006563 | POX domain |
Pfam | PF07526 | 1.1E-37 | 210 | 344 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.953 | 393 | 456 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.2E-10 | 396 | 460 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.76E-12 | 396 | 457 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-27 | 401 | 462 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.45E-17 | 401 | 464 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.4E-17 | 413 | 452 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MVSQDSPPHP HPHPDTNNIV HQFLISDPII TTQTQFQNQH FNAYGSNYRG HSITYPPPHL 60 GIIPGIQSLG VGERMSRSMD LVQAPPTTDD SQLSHTRRLM DLLGASNDNN YHAQSHNSQS 120 QSQSQRLSLS LGSHMVVPSV EYRQRSFNSD LLTPAYMVSG EEQVREACNP PGLEHVNDNY 180 PFSGSSIASS SASLNRSYST LYGADTLSTV ISHSRYLKPT QSLLDEIVNV GGKAVEMSNE 240 KYVDKLLRGN RRGGGRGLSL SSELRAEFCN SGVVSPEKQE SQLKMTKLIS LLEDVEGRYE 300 KYYHQMEEIM GAFEMIAGSE AAKSYTALAL QAMSRHFCSL RDAVVSRINV EKRKLSHDLP 360 KISTGLSQLS LFDRETRNNR IPLQHLGMIQ NQRQAWRPIR GLPETSVAIL RAWLFEHFLH 420 PYPNDSEKLM LASQTGLSKN QVSNWFINAR VRLWKPMIEE MYKEEFGDSS EDSNPFAGGS 480 MAGEGVTDHE ED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 4e-16 | 402 | 460 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 4e-16 | 402 | 460 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010110018.1 | 0.0 | BEL1-like homeodomain protein 11 | ||||
Swissprot | Q1PFD1 | 1e-107 | BLH11_ARATH; BEL1-like homeodomain protein 11 | ||||
TrEMBL | A0A2P5EZK4 | 0.0 | A0A2P5EZK4_TREOI; Homeodomain transcription factor | ||||
STRING | XP_010110018.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12645 | 23 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75430.1 | 1e-100 | BEL1-like homeodomain 11 |