PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK19985.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 883aa    MW: 97613.7 Da    PI: 7.7707
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK19985.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-08790847146
                      TSSS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqk 46 
                      r++WT +E  +l+++  ql g+          W+ I+++m     +R++ qcksrw +
        PK19985.1 790 RNKWTNQEVMKLIKLRGQLDGRfqvvkgrmaLWEEISKEMLsdgMNRSPGQCKSRWTS 847
                      79******************************************9***********76 PP
2trihelix74.81.4e-23792872186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +Wt+qev++Li++r +++ r++  k +++lWee+sk m + g++rsp qCk++w +l ++y+ +k g+k++     +++py+++++
  PK19985.1 792 KWTNQEVMKLIKLRGQLDGRFQVVKGRMALWEEISKEMLSDGMNRSPGQCKSRWTSLVQEYEDTKSGKKSN-----KSWPYYEDMD 872
                7********************************************************************84.....56*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.107.0E-6777327IPR001279Metallo-beta-lactamase
SuperFamilySSF562811.81E-7178492IPR001279Metallo-beta-lactamase
SMARTSM008492.0E-2490287IPR001279Metallo-beta-lactamase
PfamPF127062.6E-10102237IPR001279Metallo-beta-lactamase
PfamPF075214.3E-7433464IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500909.396785849IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-7786850IPR009057Homeodomain-like
SuperFamilySSF466891.39E-5788850IPR009057Homeodomain-like
SMARTSM007171.8E-7789851IPR001005SANT/Myb domain
PfamPF138379.7E-21790874No hitNo description
CDDcd122036.90E-22791856No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MVALGSLSLC PCSLLWRPNF TRRSVSCSID TPNAVGASKS NVSAQRRKGR KEGPRKSMED  60
SVQRKMEQFY EGREGPPIRV LPIGGLGEIG MNCMLVGNYD RYILIDAGVM FPDYDELGVQ  120
KIIPDTTFIK RWSHKIEAVI ITHGHEDHIG ALPWVIPALD SNTPIFASSF TMELIRKRLK  180
ENGIFVSSRL KVFRTKRKFM AGPFEIEPIR VTHSIPDCCG LVLRCADGTI LHTGDWKIDE  240
SPLDGKVFDR EGLEELSKEG VTLMMSDSTN VLSPGRTTSE SHVADALLKH ISAAKGRVIT  300
TQFASNIHRL GSVKAAADLT GRKLVFVGMS LRTYLDAAFK DGKAPIDPSS LVKVEDIEAY  360
APKDLLIVTT GSQAEPRAAL NLASFGSSHF LKLNKEDLVL YSAKVIPGNE SRVMDMLNRI  420
SEIGSTIVMG KNEGLHTSGH AYRGELEEVL RIVKPQHFLP VHGELLFLKE HELLGKSTGI  480
RHTTVIKNGE MLGVSHLRNR KVLSNGFISL GKENLQLKYS DGDKAFGTSS ELCVDERLKI  540
ALDGIIVVSM EILRPQNVNG LSENTIKGKI RITTRCLWLD KGKLLDALHK AAHAALSSCP  600
VNCPLAHMER IVSEVLRKLV RKYSGKRPEV IAIALENPAA VISDEVSARL SGKSHVGFET  660
SALKRKIDGH PNKGKSNKVQ AEAEVANRNS VSDINLQQDL EVDGVEMELL PEEETTTSTF  720
DSDILSSDSK ESDEFWKPFT TGSAIPVDNV VEENNDSISS QEQSLLENGG KESIETTTDS  780
KPKPSKPVKR NKWTNQEVMK LIKLRGQLDG RFQVVKGRMA LWEEISKEML SDGMNRSPGQ  840
CKSRWTSLVQ EYEDTKSGKK SNKSWPYYED MDTILSDSEA IAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A2e-847863619560RIBONUCLEASE J
5a0t_B2e-847863619560RIBONUCLEASE J
5a0v_A2e-847863619560RIBONUCLEASE J
5a0v_B2e-847863619560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295890.0KP229589.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB33) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027151.10.0uncharacterized protein LOC21385762 isoform X1
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A2P5DFX50.0A0A2P5DFX5_TREOI; Ribonuclease J
STRINGXP_010105237.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50993450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]