PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK19870.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 301aa    MW: 33282.9 Da    PI: 9.7981
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK19870.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w++
        PK19870.1  5 KQKWTQEEEAALKAGVVKHGAGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.367161IPR017930Myb domain
SuperFamilySSF466893.07E-15262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-13456IPR009057Homeodomain-like
SMARTSM007178.7E-7459IPR001005SANT/Myb domain
PfamPF002494.0E-8555IPR001005SANT/Myb domain
CDDcd116603.91E-19656No hitNo description
SuperFamilySSF467853.81E-15120193IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.3E-14120185IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.079122190IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.107.9E-14123190IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.2E-7127183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGAPKQKWTQ EEEAALKAGV VKHGAGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMS  60
NGWGSRDKAR VALRRIQHVP KQDESTFGSG GVQSDEESAE LMPPAASSDT QQMQQSSGPK  120
RTIVRLDNLI MEAVASLMEP GGSNKTAIAN YIEDQYRAPP DFKRLLSAKL KFLTSSGKLI  180
KVKRKYRIAP TPSLFERRTS SAMPMEGRHR DFSNFSNDDI SILTKDQVDL ELAQMKKMTA  240
KEAAAAAARA VAEAEIAIAE AEEATREAEE AEADAETAQA YADAAMKTLK ARNAQKMMMR  300
I
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017868.11e-132telomere repeat-binding factor 1 isoform X1
RefseqXP_024017869.11e-132telomere repeat-binding factor 1 isoform X1
SwissprotQ8VWK41e-100TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A2P5EYB31e-147A0A2P5EYB3_TREOI; Telomeric repeat-binding factor
STRINGXP_010091020.11e-130(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.34e-98telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]