PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK19779.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family G2-like
Protein Properties Length: 375aa    MW: 41338.3 Da    PI: 7.2725
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK19779.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.8e-32207262156
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  PK19779.1 207 KQRRNWSPELHKRFLNALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 262
                79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-28204265IPR009057Homeodomain-like
PROSITE profilePS5129414.351204264IPR017930Myb domain
SuperFamilySSF466895.98E-18205265IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-27207262IPR006447Myb domain, plants
PfamPF002492.5E-8209260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0055062Biological Processphosphate ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MQCSSGMGFE EYIEALEVER KKIQVFQREL PLCLELVNQT IDRCKQQLSG TTTTEYVHGQ  60
SECSEQTSSE GHHVFEEFMP LKRSSSSDNE EEEEKEEQSP KRQTTEKDNK KKSDWLRSVQ  120
LWNTTPDPVS PQKEEQLPKK ASVTEVKSNG GAFQPFQREK NVVKPNGSSS SACTTTNPVA  180
SAPATSSNAG GGSNKREEDK DGQNQRKQRR NWSPELHKRF LNALQQLGGS HAATPKQIRE  240
LMKVDGLTND EVKSHLQKYR LHTRRPTPAI HNNGNAQTPQ VVFVGGIWMQ PSEYAATVGG  300
NGDSPSAVAA NGIYAPVAAP AHHVAAVHRQ SSENSHNNSE ERRMSHNSHS EGGVHSNNSP  360
STSSSTHTTT TSPAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-13207260255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-13207260255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-13207260154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-13207260154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-13207260154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-13207260154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-13207260255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-13207260255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-13207260255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-13207260255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-13207260255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-13207260255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269|PubMed:27016098}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00218DAPTransfer from AT1G68670Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269|PubMed:27016098}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR7515550.0FR751555.1 Humulus lupulus mRNA for myb transcription factor (myb5 gene), cultivar Osvald's 72, clone 3366.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101716.21e-145transcription factor HHO3
SwissprotQ8VZS39e-99HHO2_ARATH; Transcription factor HHO2
TrEMBLG7ZLA40.0G7ZLA4_HUMLU; Myb transcription factor
STRINGXP_010101716.11e-145(Morus notabilis)
STRINGXP_010109406.11e-144(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.13e-95G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]
  2. Sun X, et al.
    The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides.
    J. Exp. Bot., 2018. 69(7): p. 1749-1764
    [PMID:29385617]