PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK19764.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 180aa MW: 20989 Da PI: 10.7178 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.3 | 8.7e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELS LCdaev +i+fs++gkly y+s PK19764.1 9 KRIENPTSRQVTFSKRRNGLLKKAFELSLLCDAEVGLIVFSPSGKLYQYAS 59 79***********************************************86 PP | |||||||
2 | K-box | 71.3 | 2.9e-24 | 81 | 172 | 8 | 99 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++++ e +++ ++ +k+ +e+L+ ++R+l GedL++L +keL+qLe+qL+ +++++R kK +++ e+i+ l+++ ++l een++L+kk++ PK19764.1 81 DQHSRAIEFWRTRIEEMKRSTETLEGNLRNLAGEDLSNLGMKELRQLERQLKIGVERVRCKKRRIVSEHINFLKRRRRALVEENTRLQKKVK 172 46788899*********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.0E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.581 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-31 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.64E-39 | 2 | 70 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.5E-21 | 83 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.656 | 87 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
XGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSLLCD AEVGLIVFSP SGKLYQYASH 60 DMESSIVRYK SEMGLLGSAD DQHSRAIEFW RTRIEEMKRS TETLEGNLRN LAGEDLSNLG 120 MKELRQLERQ LKIGVERVRC KKRRIVSEHI NFLKRRRRAL VEENTRLQKK VKLLDQQQEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 8e-23 | 2 | 71 | 1 | 70 | Myocyte-specific enhancer factor 2A |
3mu6_B | 8e-23 | 2 | 71 | 1 | 70 | Myocyte-specific enhancer factor 2A |
3mu6_C | 8e-23 | 2 | 71 | 1 | 70 | Myocyte-specific enhancer factor 2A |
3mu6_D | 8e-23 | 2 | 71 | 1 | 70 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 157 | KRRIVSEHINFLKRRRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM190073 | 9e-33 | KM190073.1 Carya cathayensis MADS-like protein (TM) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024017888.1 | 1e-100 | agamous-like MADS-box protein AGL1 | ||||
TrEMBL | A0A2P5FDA0 | 1e-107 | A0A2P5FDA0_TREOI; MADS-box transcription factor | ||||
STRING | VIT_17s0000g01230.t01 | 8e-84 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 2e-46 | AGAMOUS-like 16 |