PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK19727.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

G2-like

Protein Properties

Length: 408aa MW: 45150.8 Da PI: 9.5645

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK19727.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.2e-32	301	354	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ PK19727.1 301 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 354 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.15E-15	298	354	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-28	299	354	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-23	301	354	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-7	302	353	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNAK PTPSWRRSSA GASAAATSTD EEVDLGFWKR ALDSQNFSIS 60 SSMAAKPDKY HHQNNNSNNN NNITNNNHSS NSSSCFFDLS LSNNHRLVSN SSSENNSTTS 120 LFLHHNHNQN QHHHHHHSNN KHFYNHGNNN IGNNLFHSNS ASTSGSTTSM SNNTYPHHQN 180 QLLLHQNAPF HHNLVHHQQQ GGGVGGGLGQ EFGFLRPIRG IPVYHQNHPP APSSSFPFSH 240 TLETTANSLS SSMNGINNTT STNSNPFQSH HHQAAAAAAA GLMRSRFLSH RFPAKRSMRA 300 PRMRWTTTLH ARFVHAVELL GGHERATPKS VLELMDVKDL TLAHVKSHLQ MYRTVKTTDR 360 AAASSDAYEN GSSGDTTEDL MFDIQNTRRS EQSPQQGRSS GQDKDYNX

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNAK PTPSWRRSSA GASAAATSTD EEVDLGFWKR ALDSQNFSIS  60
SSMAAKPDKY HHQNNNSNNN NNITNNNHSS NSSSCFFDLS LSNNHRLVSN SSSENNSTTS  120
LFLHHNHNQN QHHHHHHSNN KHFYNHGNNN IGNNLFHSNS ASTSGSTTSM SNNTYPHHQN  180
QLLLHQNAPF HHNLVHHQQQ GGGVGGGLGQ EFGFLRPIRG IPVYHQNHPP APSSSFPFSH  240
TLETTANSLS SSMNGINNTT STNSNPFQSH HHQAAAAAAA GLMRSRFLSH RFPAKRSMRA  300
PRMRWTTTLH ARFVHAVELL GGHERATPKS VLELMDVKDL TLAHVKSHLQ MYRTVKTTDR  360
AAASSDAYEN GSSGDTTEDL MFDIQNTRRS EQSPQQGRSS GQDKDYNX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	302	356	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	302	356	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	302	356	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	302	356	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	302	356	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	302	356	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	302	356	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	302	356	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	302	356	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	302	356	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	302	356	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	302	356	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00174	DAP	Transfer from AT1G32240	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015898005.1	1e-113	probable transcription factor KAN2 isoform X3
Swissprot	Q9C616	1e-55	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A2P5EIM7	1e-150	A0A2P5EIM7_TREOI; KANADI transcription factor
STRING	EOY25194	1e-107	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5968	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	8e-55	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]