PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK19621.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 179aa MW: 19976.8 Da PI: 5.5567 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.6 | 1.6e-09 | 17 | 73 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqkyl 48 W +eE++ + +a++ + ++ +Wk+ a++++ ++ +++k +++++l PK19621.2 17 TWNKEEEKAFENAIAIHWKNttdqeedeeseeQWKKMASMVP-AKSMEELKRHYRMLL 73 7*****************************************.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.8E-6 | 14 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-6 | 16 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.09E-7 | 16 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-4 | 17 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.179 | 18 | 73 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.06E-6 | 18 | 73 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
TTNTMSSTST TTDITTTWNK EEEKAFENAI AIHWKNTTDQ EEDEESEEQW KKMASMVPAK 60 SMEELKRHYR MLLDDITAIQ DGRIPVPNYS TIPGSDSSNK TMMSKDNSHD VSGSDNKRMS 120 SSGHGSSGFS GLQAQDSGGH GGKGISRAEQ ERRKGIPWTE EEHRYCSSCA HTYTILVLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-13 | 18 | 95 | 11 | 79 | RADIALIS |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015883030.1 | 1e-47 | transcription factor MYBS1 | ||||
TrEMBL | A0A2P5CM27 | 6e-50 | A0A2P5CM27_PARAD; GAMYB transcription factor | ||||
STRING | XP_008244028.1 | 2e-45 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10694 | 33 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 3e-28 | MYB family protein |