PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK19589.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Trihelix

Protein Properties

Length: 352aa MW: 41027.1 Da PI: 4.5523

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK19589.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39	2.1e-12	125	209	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++ +L+e+ ++ +l+r++l+ +Weev++k+ ++ ++er+ qC++ +e l+++ykk+k +++ +ss++ +f++++ PK19589.1 125 WTEHGMFVLLEVWGNRFLQLGRKSLRSEDWEEVAEKVsEASKIERKESQCRNMLELLKNKYKKEKLKMEQM-GLTSSKWGFFKKID 209 ***********************************777899******************999986.89999****997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.8E-17	123	210	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MEGIGDDNPR YPRKSYTPIP YGFSNSNSNP QKQRTRTRNI PFTRPIANFN HDYDEDDEMD 60 DLNEETEHED GNVNGGSRNF DEEEDFLRHP KKRRLKNLVS AYEFSPRVSL SDSGRNFSRV 120 GDDDWTEHGM FVLLEVWGNR FLQLGRKSLR SEDWEEVAEK VSEASKIERK ESQCRNMLEL 180 LKNKYKKEKL KMEQMGLTSS KWGFFKKIDM LMASSPRQDY GLACGVDSGE FVFMNTRVYL 240 DRSDGFDEMR DSPMESEASE DETEDGKGGR DSDKGSSSSE SFKVLTDSIN QFGEIYGKIE 300 NSKRHQMMEL EKLRKDFSKE LELQKKQIME RTEAEIAKIR KEEDEDDDDD DD

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MEGIGDDNPR YPRKSYTPIP YGFSNSNSNP QKQRTRTRNI PFTRPIANFN HDYDEDDEMD  60
DLNEETEHED GNVNGGSRNF DEEEDFLRHP KKRRLKNLVS AYEFSPRVSL SDSGRNFSRV  120
GDDDWTEHGM FVLLEVWGNR FLQLGRKSLR SEDWEEVAEK VSEASKIERK ESQCRNMLEL  180
LKNKYKKEKL KMEQMGLTSS KWGFFKKIDM LMASSPRQDY GLACGVDSGE FVFMNTRVYL  240
DRSDGFDEMR DSPMESEASE DETEDGKGGR DSDKGSSSSE SFKVLTDSIN QFGEIYGKIE  300
NSKRHQMMEL EKLRKDFSKE LELQKKQIME RTEAEIAKIR KEEDEDDDDD DD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	96	PKKRRLKN
2	90	95	KKRRLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009352475.1	1e-118	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A251NFI8	1e-117	A0A251NFI8_PRUPE; Uncharacterized protein
STRING	XP_009352475.1	1e-118	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-75	Trihelix family protein