PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK19496.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

TALE

Protein Properties

Length: 569aa MW: 62013.3 Da PI: 6.2835

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK19496.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.3e-09	439	476	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + PK19496.1 439 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 476 664459******************************88 PP
2	BELL	127.9	3.5e-41	301	372	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+q+lq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+a+ag+gsakpYt+lAl++iSrhFrcL dai++qi PK19496.1 301 EKQDLQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDAIAGCGSAKPYTALALQTISRHFRCLHDAIVGQI 372 6899*******************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.1E-62	223	370	IPR006563	POX domain
Pfam	PF07526	5.4E-50	229	369	IPR006563	POX domain
PROSITE profile	PS50071	12.163	417	480	IPR001356	Homeobox domain
SMART	SM00389	1.0E-9	420	484	IPR001356	Homeobox domain
CDD	cd00086	3.25E-13	420	481	No hit	No description
SuperFamily	SSF46689	2.01E-17	421	487	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.4E-29	423	486	IPR009057	Homeodomain-like
Pfam	PF05920	3.7E-18	437	476	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence Send to blast
MATYYSSSNN QRDNAQMMYS REHLPTSYPE ASVIPSNMMM YMNTGSYSDA LAGNSQQQSN 60 CMEMPPMGGP SDSATQQQDI LSNLGGTRMG EHDFNEWRSS DGKNDMLVNA HSMAGGAPSI 120 FHGGQNLQGQ GLSLSLGTQI SSGIQMPSIS FRNPNMGFSS FLSPNPSDSG EGGGGGCRNG 180 SSRDEQQQQP RNTNNNVEYL GPGFVGGVNQ DSSKGELSPY GMSSIARAVP SSKYLKATQQ 240 LLDEVVNVRK ALKQHDGEKA QGTQEQGLKS PREGDDGSKN ESTPGGGESA SNSQPELSHS 300 EKQDLQNKLT KLLSMLDEVD RRYKQYYHQM QIVVSSFDAI AGCGSAKPYT ALALQTISRH 360 FRCLHDAIVG QIKVTRKSLG EQDASGNIKG VGISRLRYVD QQLRQQRALQ QLGMMQQHAW 420 RPQRGLPESS VSILRAWLFE HFLHPYPKDS DKIMLARQTG LTRSQVSNWF INARVRLWKP 480 MVEEMYKEEI GDAEMDSNSS SENAATKATT KGDIMTSDDN NRGGEDLQQS ASSTGTAERC 540 STGHFMDSSK TDHITDVEMG AGSVGSAAX

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence Send to blast

MATYYSSSNN QRDNAQMMYS REHLPTSYPE ASVIPSNMMM YMNTGSYSDA LAGNSQQQSN  60
CMEMPPMGGP SDSATQQQDI LSNLGGTRMG EHDFNEWRSS DGKNDMLVNA HSMAGGAPSI  120
FHGGQNLQGQ GLSLSLGTQI SSGIQMPSIS FRNPNMGFSS FLSPNPSDSG EGGGGGCRNG  180
SSRDEQQQQP RNTNNNVEYL GPGFVGGVNQ DSSKGELSPY GMSSIARAVP SSKYLKATQQ  240
LLDEVVNVRK ALKQHDGEKA QGTQEQGLKS PREGDDGSKN ESTPGGGESA SNSQPELSHS  300
EKQDLQNKLT KLLSMLDEVD RRYKQYYHQM QIVVSSFDAI AGCGSAKPYT ALALQTISRH  360
FRCLHDAIVG QIKVTRKSLG EQDASGNIKG VGISRLRYVD QQLRQQRALQ QLGMMQQHAW  420
RPQRGLPESS VSILRAWLFE HFLHPYPKDS DKIMLARQTG LTRSQVSNWF INARVRLWKP  480
MVEEMYKEEI GDAEMDSNSS SENAATKATT KGDIMTSDDN NRGGEDLQQS ASSTGTAERC  540
STGHFMDSSK TDHITDVEMG AGSVGSAAX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	9e-17	426	483	1	58	Homeobox protein Meis1
4xrs_B	9e-17	426	483	1	58	Homeobox protein Meis1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010107836.1	0.0	BEL1-like homeodomain protein 6
Refseq	XP_024028943.1	0.0	BEL1-like homeodomain protein 6
Refseq	XP_024028944.1	0.0	BEL1-like homeodomain protein 6
Refseq	XP_024028946.1	0.0	BEL1-like homeodomain protein 6
Refseq	XP_024028947.1	0.0	BEL1-like homeodomain protein 6
Refseq	XP_024028948.1	0.0	BEL1-like homeodomain protein 6
Swissprot	O65685	1e-132	BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBL	A0A2P5DVS5	0.0	A0A2P5DVS5_TREOI; Homeodomain transcription factor
STRING	XP_010107836.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2146	31	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	1e-119	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226]