PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK19352.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 261aa MW: 29641 Da PI: 5.5898 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.7 | 2.6e-12 | 7 | 44 | 13 | 50 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 f R+++++KKA S LC+ +++v+ + stgkl+ ++ PK19352.1 7 FFERKATLMKKARQFSELCESQICVVCYDSTGKLFVWP 44 889********************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.199 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-13 | 5 | 67 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.0E-11 | 6 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-5 | 9 | 24 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-5 | 24 | 45 | IPR002100 | Transcription factor, MADS-box |
Gene3D | G3DSA:3.30.710.10 | 3.3E-4 | 28 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MKNDKVFFER KATLMKKARQ FSELCESQIC VVCYDSTGKL FVWPEDSIRA HSVISNYYEK 60 LESKKRNNSE VGLSNVLGKK LRKLEEKVST TTHDNVTVNG VSSIPIMNWD EKLAILSKNS 120 LMGLAQYFEA KIKGLDEKIE MGKGKSQLIV SQTQVQNNND DHDGFDQDDY FNSLPTLMPL 180 PPPLLPSMPQ HYGPLNYEDY PCNDTEYSES QFDDGQIQEF YGATGVSHQL HYRASASGYY 240 ATDHHLQSMS TVSSPLQYCN X |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15475 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18650.1 | 1e-13 | AGAMOUS-like 103 |