PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK19296.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

BES1

Protein Properties

Length: 704aa MW: 79028.8 Da PI: 6.0824

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK19296.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	140.3	1.8e-43	78	218	1	133
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssas.......aspess 93 gg++r ++ +E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ s+p+ + +a+++s+ a p+ PK19296.1 78 GGARRCRPLEEKERTKLRERHRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQPQGSRHAVVNSTVatsssghAAPQQT 177 6899******************************************************************999999444444444331111111222222 PP DUF822 94 lq.sslkssalaspvesysaspksssfpspssldsislasa 133 l +++ + +s v+ ++++k + +p +s +d ++a + PK19296.1 178 LPsLKACAAGYQSSVDFNANRMKGVYMPCSSPYDISTSARS 218 22133333456788888888888888888888887766544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	7.7E-39	80	195	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.35E-183	261	698	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.1E-202	264	701	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.4E-105	270	689	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.0E-71	301	315	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.0E-71	322	340	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.0E-71	344	365	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	348	356	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00842	5.3E-8	427	436	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	5.0E-71	437	459	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.0E-71	510	529	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.0E-71	544	560	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.0E-71	561	572	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	5.0E-71	579	602	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	5.3E-8	582	592	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	5.0E-71	619	641	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	5.3E-8	670	684	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	5.3E-8	685	699	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence Send to blast
MASEMHKLIG ASEEDDEEEM EMDVKEEDDD DEDRRKHAAA SASVMVGFDG GMPTSSSNNN 60 HQFQELQQVQ EVSTPGGGGA RRCRPLEEKE RTKLRERHRR AITAKILAGL RRHGNYNLRV 120 RADINDVIAA LAREAGWVVL PDGTTFPSRS QPQGSRHAVV NSTVATSSSG HAAPQQTLPS 180 LKACAAGYQS SVDFNANRMK GVYMPCSSPY DISTSARSQT STMVGDGGEQ TESHPHIVGS 240 IDPIDDKQVV DISPKLSERD FSGTPYIPVY VMLPLGVVNM KCELVDPDGL LKQLRVLKSV 300 NVDGVSVDCW WGIVEAHAPQ EYNWNGYKRL FQMVRELKLK LQVMMSFHEC GGNVGDDVCI 360 PLPHWVAEIG RNNPDIFFTD REGRRNPECL SWGIDKERVL RGRTAVEVYF DYMRSFRIEF 420 NEFFEEGIIS MIQVGLGPCG ELRYPSCPVK HGWRYPGIGE FQCYDQYLLK SLRKAAEERG 480 HSFWARGPDN AGSYNSRPHE TGFFCDGGDY DGFYGRFFLN WYSKVLVDHG DRVLCLAKLA 540 FEGTCIATKL SGIHWWYKTA SHAAELTAGF YNSCNRDGYA AIMSMLSKHG AALNFTCAEL 600 HMLNHHEDFQ EALADPEGLV WQVLNAAWDV CVPVANENSL PCHDQVSYNK ILDDAKPSSD 660 PDRRHFSSFT YLRVSPHLME RHNFVEFEHF VKKMHGEATR VQGA

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence Send to blast

MASEMHKLIG ASEEDDEEEM EMDVKEEDDD DEDRRKHAAA SASVMVGFDG GMPTSSSNNN  60
HQFQELQQVQ EVSTPGGGGA RRCRPLEEKE RTKLRERHRR AITAKILAGL RRHGNYNLRV  120
RADINDVIAA LAREAGWVVL PDGTTFPSRS QPQGSRHAVV NSTVATSSSG HAAPQQTLPS  180
LKACAAGYQS SVDFNANRMK GVYMPCSSPY DISTSARSQT STMVGDGGEQ TESHPHIVGS  240
IDPIDDKQVV DISPKLSERD FSGTPYIPVY VMLPLGVVNM KCELVDPDGL LKQLRVLKSV  300
NVDGVSVDCW WGIVEAHAPQ EYNWNGYKRL FQMVRELKLK LQVMMSFHEC GGNVGDDVCI  360
PLPHWVAEIG RNNPDIFFTD REGRRNPECL SWGIDKERVL RGRTAVEVYF DYMRSFRIEF  420
NEFFEEGIIS MIQVGLGPCG ELRYPSCPVK HGWRYPGIGE FQCYDQYLLK SLRKAAEERG  480
HSFWARGPDN AGSYNSRPHE TGFFCDGGDY DGFYGRFFLN WYSKVLVDHG DRVLCLAKLA  540
FEGTCIATKL SGIHWWYKTA SHAAELTAGF YNSCNRDGYA AIMSMLSKHG AALNFTCAEL  600
HMLNHHEDFQ EALADPEGLV WQVLNAAWDV CVPVANENSL PCHDQVSYNK ILDDAKPSSD  660
PDRRHFSSFT YLRVSPHLME RHNFVEFEHF VKKMHGEATR VQGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1q6d_A	1e-155	266	697	11	444	beta-amylase
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010105937.1	0.0	beta-amylase 7
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A2P5F2Q7	0.0	A0A2P5F2Q7_TREOI; Beta-amylase
STRING	XP_010105937.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10883	33	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]