PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK19092.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Nin-like

Protein Properties

Length: 1045aa MW: 115099 Da PI: 5.4551

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK19092.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.8e-29	632	682	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ PK19092.1 632 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 682 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.859	621	702	IPR003035	RWP-RK domain
Pfam	PF02042	4.0E-26	635	682	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-23	943	1036	No hit	No description
SMART	SM00666	4.0E-24	950	1032	IPR000270	PB1 domain
PROSITE profile	PS51745	25.91	950	1032	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	7.9E-25	950	1031	No hit	No description
Pfam	PF00564	8.9E-19	951	1031	IPR000270	PB1 domain
CDD	cd06407	9.82E-37	951	1031	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1045 aa Download sequence Send to blast
MSESEEEAPP PPPPSTTATI ASNTVSFPPK SSKEVLMDFD LDLDNPWPMD QIAFVSNPMS 60 PLLFSSSSAD HPFSPLWAFA DAENEENNHN NSNNHNSNNN TNNCNSNNNN SSNSNNNSNK 120 FGRHANSTPM ADSSRFSCNS NSVAQRPVGN EENRSLPSPF SGLVPVDNPN GYYWIKERMT 180 QALRYLKEST DQHVLAQVWA PVKNGCRYVL STSGQPFVLD PDSNGLHQYR MVSLMYSFSV 240 DGGETNEVLG LPGRVFRQKL PEWTPNVQYY SITEYPRLDH AQHYNVRGSL ALPVFEPSGQ 300 SCVGVLELIM TSEKINYAPE VDKVCKALEA VNLRSAEILD HTDTQICNEG RQSALTEILE 360 ILTAACETHK LPMAQTWVPC MHRNVLAYGG GLKKNCTSID GSCMGQVCMS TTEVAFYIVD 420 ARMWGFREAC LEHHLQKGQG VAGRAFYSRN LCFSSDITQF CKNEYPLVHY ARMFELTSCF 480 AVCLQSSHTG NDNYVLEFFL PPNTNPSEQH TILGSLLATM KKHFQSLKVA SGIGLEEEGI 540 VEVVRVSANG GLESNLECIR IPQIAESPQG HSALPNGGDM VQRDLMKQPS TVEHDSANGG 600 QDTAHDGGNM NHGSVSDHKE TKKSERKRGK TEKSISLEVL QQYFAGSLKD AAKSLGVCPT 660 TMKRICRQHG ISRWPSRKIN KVNRSLSKLK RVIESVQGAE GAFGLTPIAT SPLPVPVTSI 720 SRPSTSNGTN QQNSPCHVHY DPPLERKDSP TNSSCRRGQT EIEDQLQGGG ILIQKDLVQE 780 NGGFYIPENN RGSNHSKSGS GSREVSVGTP TSHGSCQGSP ANGNIMLKDP FSYSIQEQCI 840 KVEGSPEPTP QPTNGLIFSV PEALVTAESQ EPFGAMLVED AGSSKDLRNL CHASDAILDE 900 SVPEYCWMNP PPLPPRSDFA APKDTTTTTT DIIITQTQPN VNRVSQEMRS VTIKATYRED 960 IIRFRLSLSC NIVELREEVA KRLKMEVGIF DIKYMDDDQE WVLIACDADL QECMDVCRSS 1020 GCNMIRLLIH DIMPNLGSSC ESTEE

Sequence ? help Back to Top

Protein Sequence Length: 1045 aa Download sequence Send to blast

MSESEEEAPP PPPPSTTATI ASNTVSFPPK SSKEVLMDFD LDLDNPWPMD QIAFVSNPMS  60
PLLFSSSSAD HPFSPLWAFA DAENEENNHN NSNNHNSNNN TNNCNSNNNN SSNSNNNSNK  120
FGRHANSTPM ADSSRFSCNS NSVAQRPVGN EENRSLPSPF SGLVPVDNPN GYYWIKERMT  180
QALRYLKEST DQHVLAQVWA PVKNGCRYVL STSGQPFVLD PDSNGLHQYR MVSLMYSFSV  240
DGGETNEVLG LPGRVFRQKL PEWTPNVQYY SITEYPRLDH AQHYNVRGSL ALPVFEPSGQ  300
SCVGVLELIM TSEKINYAPE VDKVCKALEA VNLRSAEILD HTDTQICNEG RQSALTEILE  360
ILTAACETHK LPMAQTWVPC MHRNVLAYGG GLKKNCTSID GSCMGQVCMS TTEVAFYIVD  420
ARMWGFREAC LEHHLQKGQG VAGRAFYSRN LCFSSDITQF CKNEYPLVHY ARMFELTSCF  480
AVCLQSSHTG NDNYVLEFFL PPNTNPSEQH TILGSLLATM KKHFQSLKVA SGIGLEEEGI  540
VEVVRVSANG GLESNLECIR IPQIAESPQG HSALPNGGDM VQRDLMKQPS TVEHDSANGG  600
QDTAHDGGNM NHGSVSDHKE TKKSERKRGK TEKSISLEVL QQYFAGSLKD AAKSLGVCPT  660
TMKRICRQHG ISRWPSRKIN KVNRSLSKLK RVIESVQGAE GAFGLTPIAT SPLPVPVTSI  720
SRPSTSNGTN QQNSPCHVHY DPPLERKDSP TNSSCRRGQT EIEDQLQGGG ILIQKDLVQE  780
NGGFYIPENN RGSNHSKSGS GSREVSVGTP TSHGSCQGSP ANGNIMLKDP FSYSIQEQCI  840
KVEGSPEPTP QPTNGLIFSV PEALVTAESQ EPFGAMLVED AGSSKDLRNL CHASDAILDE  900
SVPEYCWMNP PPLPPRSDFA APKDTTTTTT DIIITQTQPN VNRVSQEMRS VTIKATYRED  960
IIRFRLSLSC NIVELREEVA KRLKMEVGIF DIKYMDDDQE WVLIACDADL QECMDVCRSS  1020
GCNMIRLLIH DIMPNLGSSC ESTEE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024028564.1	0.0	protein NLP6 isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2P5B855	0.0	A0A2P5B855_PARAD; NIN-like transcription factor
STRING	XP_010107269.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]