PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK19051.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 285aa MW: 32927.4 Da PI: 5.9429

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK19051.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.5	6.4e-50	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrF P+deelv++yL kk+ ++++ ++ e+d++++ePw+Lp +k + +ewyfFs rd+kyatg r+nrat+ gyWkatgkd++v++ ++ PK19051.1 10 LPPGFRFYPSDEELVCHYLYKKICNEEILK-GTLVEIDLHTCEPWQLPDVAKLNASEWYFFSFRDRKYATGYRTNRATTCGYWKATGKDRTVVDPlTKDI 108 79***********************877.78***********87777889**********************************988889 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg++ktLvfy++rap+g+kt W+mhe+rle PK19051.1 109 VGMRKTLVFYRNRAPNGVKTGWIMHEFRLE 138 *************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-60	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	56.92	10	156	IPR003441	NAC domain
Pfam	PF02365	1.7E-27	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KICNEEILKG TLVEIDLHTC EPWQLPDVAK 60 LNASEWYFFS FRDRKYATGY RTNRATTCGY WKATGKDRTV VDPLTKDIVG MRKTLVFYRN 120 RAPNGVKTGW IMHEFRLETP HMPPKEDWVL CRVFHKSKES SSENMNNNIN QGINNSQQFN 180 HLSSISSSPP TIISDHHQQL RNLGNNNYDD DHDQIMINNI NHHDFSIINN NIIGTSITNV 240 NAATTTTEIS STTNDDYAFI WGINNNFNDD DQIREFDLEN SMVFX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-46	9	164	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-46	9	164	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-46	9	164	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-46	9	164	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-46	9	164	19	174	NAC domain-containing protein 19
3swm_B	2e-46	9	164	19	174	NAC domain-containing protein 19
3swm_C	2e-46	9	164	19	174	NAC domain-containing protein 19
3swm_D	2e-46	9	164	19	174	NAC domain-containing protein 19
3swp_A	2e-46	9	164	19	174	NAC domain-containing protein 19
3swp_B	2e-46	9	164	19	174	NAC domain-containing protein 19
3swp_C	2e-46	9	164	19	174	NAC domain-containing protein 19
3swp_D	2e-46	9	164	19	174	NAC domain-containing protein 19
4dul_A	2e-46	9	164	16	171	NAC domain-containing protein 19
4dul_B	2e-46	9	164	16	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007050267.1	1e-121	PREDICTED: NAC domain-containing protein 21/22
TrEMBL	A0A2P5CNR4	1e-129	A0A2P5CNR4_PARAD; NAC domain containing protein
TrEMBL	A0A2P5E874	1e-129	A0A2P5E874_TREOI; NAC domain containing protein
STRING	EOX94424	1e-121	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4381	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-90	NAC domain containing protein 74