PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK18945.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | B3 | ||||||||
Protein Properties | Length: 225aa MW: 25873.2 Da PI: 9.6723 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.9 | 2.4e-15 | 143 | 224 | 1 | 81 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvv 81 ffk+ +++++ ++l++p fa+ + ++ +++tl++++ +++sW++k++y+ ++ + +++GW++Fv +n+Lk+gD++v PK18945.1 143 FFKTIMQPYYILGRNLTFPQVFAQMYlNNYRFCDVTLKVQN-ENKSWRLKYTYTEHKIAqPRFQGGWQSFVVDNNLKVGDVCV 224 99*********************999644444666666665.77*********777776699********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.4E-17 | 137 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.75E-15 | 138 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.58E-16 | 142 | 224 | No hit | No description |
SMART | SM01019 | 0.0051 | 143 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-12 | 143 | 224 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.125 | 143 | 225 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
GYMLTFRYDG NSEIYVIIFG TNNVEIDYPT APVNFCKSSI DNGKLRVPKR EVIDNVDSFE 60 ILDDISSCPK TGVKSSCSQP SKRMKTNPPG KLDSPSKSNG DRFATYPTKK MTNGIRKTMK 120 SLTHSEKIVA FQRTNDFTSE HPFFKTIMQP YYILGRNLTF PQVFAQMYLN NYRFCDVTLK 180 VQNENKSWRL KYTYTEHKIA QPRFQGGWQS FVVDNNLKVG DVCVX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5FY29 | 6e-68 | A0A2P5FY29_TREOI; B3 DNA binding domain containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-16 | B3 family protein |