PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK18893.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C2H2

Protein Properties

Length: 441aa MW: 48959.3 Da PI: 9.8263

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK18893.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.6e-05	208	230	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F +nL+ H+ + H PK18893.1 208 TCPECGEIFMKAENLELHQAVrH 230 8******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.182	207	235	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	207	230	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.44E-24	232	440	No hit	No description
Gene3D	G3DSA:3.90.228.10	4.5E-20	233	439	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MAKQKNQKKP SKQTHHQSQK LESQKVEKPP SWAVVRDLLT CKYSQTLQPE EQKKQQQLLL 60 QQQQHQQKLK QKQKQKLKQK QEQEQAIEEN AKKNKKMKCS GSLCSNTKVM HRPETGSPEL 120 HKKKASMGST LPNNESSNRS SMKAPVHELN GVVSTSSSSL SVSSNSSVGG SFRGMPFRRF 180 SGCYECRMVV DPVLGFTRDP SLRTTICTCP ECGEIFMKAE NLELHQAVRH AVSELGPEDT 240 SKNIVEIIFQ SSWLKKEAPI CKIDRILKVH NTQKTISKFE EYREAIKAKA TKLPKKHPRC 300 IADGNELLRF HCATFMCSLG LNGSSNLCNS MPQCNICSII KNGFKVAGEP TGEGLGKGIL 360 TTATSGKAHD HVGEAGGNQG EKRAMLVCRV IAGRVKKNME GSMEEYDSVA GAVGVYSNLD 420 ELFVFNPKAI LPCFVVIYTG F

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MAKQKNQKKP SKQTHHQSQK LESQKVEKPP SWAVVRDLLT CKYSQTLQPE EQKKQQQLLL  60
QQQQHQQKLK QKQKQKLKQK QEQEQAIEEN AKKNKKMKCS GSLCSNTKVM HRPETGSPEL  120
HKKKASMGST LPNNESSNRS SMKAPVHELN GVVSTSSSSL SVSSNSSVGG SFRGMPFRRF  180
SGCYECRMVV DPVLGFTRDP SLRTTICTCP ECGEIFMKAE NLELHQAVRH AVSELGPEDT  240
SKNIVEIIFQ SSWLKKEAPI CKIDRILKVH NTQKTISKFE EYREAIKAKA TKLPKKHPRC  300
IADGNELLRF HCATFMCSLG LNGSSNLCNS MPQCNICSII KNGFKVAGEP TGEGLGKGIL  360
TTATSGKAHD HVGEAGGNQG EKRAMLVCRV IAGRVKKNME GSMEEYDSVA GAVGVYSNLD  420
ELFVFNPKAI LPCFVVIYTG F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018851366.1	0.0	PREDICTED: uncharacterized protein LOC109013663
TrEMBL	A0A2P5E5K8	0.0	A0A2P5E5K8_TREOI; Zinc finger, C2H
STRING	XP_008233905.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8473	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-102	C2H2-like zinc finger protein