PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18872.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 193aa    MW: 21790.3 Da    PI: 9.8231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18872.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-053557223
               EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
               +C+ C+++++++ +L  Hi+  H
  PK18872.2 35 SCSVCSRVYPTSRLLSIHISEaH 57
               6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.44732IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280932IPR007087Zinc finger, C2H2
SMARTSM0035553457IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803657IPR007087Zinc finger, C2H2
SMARTSM003557.17297IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807497IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDCTGXVSCP IAGCGAHLTS LEDFEDHYNA RHTASCSVCS RVYPTSRLLS IHISEAHDSF  60
FQAKVARGYT MYECLVESCT LKFKNYKSRH QHLVDKHKFP TSFEFFKKSH ASKKLRQKQQ  120
RKQAIHKKTD TSNMEVENET IDNLVSAVSK LSTSDSSPSS ISFGRRNTRG LTFVPRAIQR  180
DKRPGSSSTE TKT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447049.11e-108zinc finger protein 511
RefseqXP_006470078.11e-108zinc finger protein 511
TrEMBLA0A2P5CJX11e-111A0A2P5CJX1_PARAD; TFIIH C1-like domain containing protein
TrEMBLA0A2P5FC821e-111A0A2P5FC82_TREOI; TFIIH C1-like domain containing protein
STRINGXP_006470078.11e-108(Citrus sinensis)
STRINGXP_006447049.11e-108(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.12e-76zinc ion binding;nucleic acid binding;zinc ion binding