PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK18842.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

GRF

Protein Properties

Length: 543aa MW: 58594.5 Da PI: 9.1163

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK18842.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.3	1.5e-24	237	281	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e PK18842.1 237 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 281 79****************************************985 PP
2	QLQ	59.6	8.8e-21	167	203	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+++L++Q+l+yKy+ an+P+P++Ll +i+k PK18842.1 167 GPFTSSQWMELEQQALIYKYITANVPIPSNLLIPIRK 203 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.8E-11	167	203	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.2E-15	168	202	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.122	168	203	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	237	281	IPR014977	WRC domain
Pfam	PF08879	6.3E-21	238	280	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MGSDYGSGAI SESGNEFISS LSTSSTDPEM KQRLYGSGKQ ERSGAASNSS TGLDEFWRSS 60 SKIAKTTEDF SYCKLGMAQL QRQRNASLPV QRSNCTGQQQ QMLSFSSPKS ETLMADKTSS 120 QNNATLLPCN YPNAFLSAYT RNTGYNSGSL NSNGGTNMHG AITGAKGPFT SSQWMELEQQ 180 ALIYKYITAN VPIPSNLLIP IRKAIDSSGF SHFSGGLLRP NTLGWGSYHL GFSNNADPEP 240 GRCRRTDGKK WRCSRDAVAD QKYCERHMNR GRHRSRKPVE GQTAAKTSKA VPLASSSPSS 300 TSVAVSGAAG SSNNSLTISN QHLLQQQNTS ATTHLNRMEQ QKTSSGLSLY SKDQNAFLTQ 360 SFGLATSDSL PQNQQHSLRH FIDDWPKSQQ TNREALSWPE IDMQTDRTQL SISMPLASSD 420 HYIPSSSSPE KTSLSMSLGV GAEEQQVGNR NWIPIAWENS LMGGPLGEVL HHSNNNKNGS 480 VVECKNSSSS SSSVLNLMTQ GWDNSPPMGS SSPTGVLQKT AFGSLSNSSA GSSPRGENNK 540 SLD

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MGSDYGSGAI SESGNEFISS LSTSSTDPEM KQRLYGSGKQ ERSGAASNSS TGLDEFWRSS  60
SKIAKTTEDF SYCKLGMAQL QRQRNASLPV QRSNCTGQQQ QMLSFSSPKS ETLMADKTSS  120
QNNATLLPCN YPNAFLSAYT RNTGYNSGSL NSNGGTNMHG AITGAKGPFT SSQWMELEQQ  180
ALIYKYITAN VPIPSNLLIP IRKAIDSSGF SHFSGGLLRP NTLGWGSYHL GFSNNADPEP  240
GRCRRTDGKK WRCSRDAVAD QKYCERHMNR GRHRSRKPVE GQTAAKTSKA VPLASSSPSS  300
TSVAVSGAAG SSNNSLTISN QHLLQQQNTS ATTHLNRMEQ QKTSSGLSLY SKDQNAFLTQ  360
SFGLATSDSL PQNQQHSLRH FIDDWPKSQQ TNREALSWPE IDMQTDRTQL SISMPLASSD  420
HYIPSSSSPE KTSLSMSLGV GAEEQQVGNR NWIPIAWENS LMGGPLGEVL HHSNNNKNGS  480
VVECKNSSSS SSSVLNLMTQ GWDNSPPMGS SSPTGVLQKT AFGSLSNSSA GSSPRGENNK  540
SLD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM473368	6e-55	AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015885120.1	1e-178	growth-regulating factor 1-like isoform X2
Refseq	XP_024930715.1	1e-178	growth-regulating factor 1-like isoform X1
Swissprot	Q6AWY3	4e-84	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2P5CWY8	0.0	A0A2P5CWY8_PARAD; Growth-regulating factor
STRING	EOY15657	1e-172	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2085	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-68	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]