PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK18282.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | ARF | ||||||||
Protein Properties | Length: 750aa MW: 82070 Da PI: 7.1924 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.3 | 1.6e-24 | 162 | 263 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + +++el++ PK18282.1 162 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGDDGELRL 258 99****************************963.3445679************************************************..3489999** PP EEE-S CS B3 95 kvfrk 99 +++r+ PK18282.1 259 GIRRA 263 **996 PP | |||||||
2 | Auxin_resp | 118.6 | 5e-39 | 288 | 369 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+st+s+F+ +YnPras+s F+++v+k++++l++++svGmRfkm+feted++err++G+v+g+ d+dpvrWp+SkWr+L PK18282.1 288 VVSAMSTRSAFNLYYNPRASSSAFIIPVRKFLRSLDHPFSVGMRFKMRFETEDAAERRYTGLVTGIGDMDPVRWPGSKWRCL 369 57899****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.09E-42 | 154 | 268 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-40 | 157 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.13E-22 | 160 | 262 | No hit | No description |
SMART | SM01019 | 3.6E-23 | 162 | 264 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.479 | 162 | 264 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-22 | 162 | 263 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.1E-34 | 289 | 369 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 750 aa Download sequence Send to blast |
MAGPGPGLIL IDLNTTEEDE TPSSGSTAST SSASAYITNT TASASASSSP SSSSSSSVCL 60 ELWHACAGPL ISLPKKGTVV VYFPQGHLEQ LSDFPASLCD FPPHLFCRVS DVKLHAEEGT 120 DEVYAQVSLF PESEKLRDGE FDADGDEEDI EAVVKSTTPH MFCKTLTASD TSTHGGFSVP 180 RRAAEDCFPP LDYNQQRPSQ ELVAKDLHGL EWRFRHIYRG QPRRHLLTTG WSAFVNKKKL 240 VSGDAVLFLR GDDGELRLGI RRAAQVKGCG SFPTMFSQQL NYSSMKDVVS AMSTRSAFNL 300 YYNPRASSSA FIIPVRKFLR SLDHPFSVGM RFKMRFETED AAERRYTGLV TGIGDMDPVR 360 WPGSKWRCLA VRWDDIDSNR HGRVSPWEIE PSGSVSSSTG MMAPGLKRTR IGLSSGKAEF 420 PVPNGIGASD FGEPLRFQKV LQGQEILGFD TPFDGVGAQC QHPSERRGFP SLNSSGIAVM 480 GNNSVRHMRV NSDNITPARM GFGESFRFHK VLQGQEIHPT SPCGRAPATH EESEYSGFEF 540 MDRVQVPSSR SAWSNVMQNN TTLGRTSAKS IQVSSPSSVL MFQQAINPLS TFNAIQNSHN 600 QEEQRATKRS LCTAESTNVG NLMPFPLSDR GFNGEYHGGT KSVYHSSDRN PHGISCPLTT 660 LPDFRSSQDV VSSCKSSCRL FGFSLTEEKH LPSEKGSPVS SSLNPGVPLF PDVGGQFHTK 720 PPLMTKAVRS NCTKVSDLYT VKDMLFDIAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-113 | 42 | 398 | 3 | 361 | Auxin response factor 1 |
4ldy_B | 1e-113 | 42 | 398 | 3 | 361 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00021 | PBM | Transfer from AT2G33860 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010111164.2 | 0.0 | auxin response factor 3 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A2P5CHY9 | 0.0 | A0A2P5CHY9_TREOI; Auxin response factor | ||||
STRING | XP_010111164.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4576 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |