PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK18231.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 172aa MW: 19499.1 Da PI: 10.8191 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.6 | 5.2e-12 | 1 | 39 | 10 | 48 |
HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 e+lvd++++ G g+W++ ++ g++R++k+c++rw +yl PK18231.1 1 EKLVDYITRNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 39 79***********************************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6e-17 | 45 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++l++++++ lG++ W+tIa +++ gRt++++k+ w+++l PK18231.1 45 RGKFSEDEEKLIINLHAVLGNK-WSTIAGHLP-GRTDNEIKNLWNTHL 90 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.16E-4 | 1 | 39 | No hit | No description |
SuperFamily | SSF46689 | 1.45E-23 | 1 | 86 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-17 | 1 | 46 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2 | 1 | 41 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 11.438 | 1 | 39 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.8E-9 | 1 | 39 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 25.625 | 40 | 94 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-13 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 45 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 47 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.56E-10 | 47 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 172 aa Download sequence Send to blast |
EKLVDYITRN GHGSWRALPK LAGLNRCGKS CRLRWTNYLR PDIKRGKFSE DEEKLIINLH 60 AVLGNKWSTI AGHLPGRTDN EIKNLWNTHL KKKLLQMGID PVTHRPRTDI HLNLLSNLPQ 120 LIVAANFASN FLNNNNNTTN QSLSKLQLLQ NIFQVLGPTS NPNPNPNPNP NX |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-22 | 1 | 94 | 16 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010087464.2 | 8e-85 | transcription factor MYB41 | ||||
Swissprot | Q9S9Z2 | 1e-68 | MYB93_ARATH; Transcription factor MYB93 | ||||
Swissprot | Q9SBF3 | 4e-69 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A2P5DWB5 | 5e-85 | A0A2P5DWB5_PARAD; MYB transcription factor | ||||
STRING | XP_010087464.1 | 4e-84 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF402 | 34 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-72 | myb domain protein 9 |
Publications ? help Back to Top | |||
---|---|---|---|
|