PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK18132.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 325aa MW: 37741 Da PI: 9.6449 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.1 | 2.8e-17 | 30 | 120 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 fk+ + +l+ ++l++p+kf++++ k+ s + ++ + g +W++kl + k g+++l+kGW eF+k +k g +++Fk++g sef +v ++++ PK18132.1 30 FKIILE-ETLQANMLRIPRKFIRKYW--KTLSESVLVRLPCGSKWNMKL--KEKEGSIWLEKGWPEFAKHYSIKRGSMLIFKYVGYSEF--YVVICDT 120 555544.4555667***********5..3467789999***********..**********************************9999..9999997 PP | |||||||
2 | B3 | 50.8 | 3e-16 | 216 | 314 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-...TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt...kGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ffk+ +++++ k + +p kfa ++ ++ ++ + +l ++g+ W+v+l+ + + +y ++ GW +Fv++n++++gD+++F+l + +e + v+++ PK18132.1 216 FFKAVMQPSYVKAEFFNVPQKFAYRYLKD--QG-DAVLCVPNGKNWSVQLRTSILRHEYSISrlcCGWHKFVNDNKIEVGDVCIFELLDGTEIAFQVHIV 312 788888888888888********999544..33.7999************8855555555554449********************88667766889888 PP -S CS B3 98 rk 99 r+ PK18132.1 313 RR 314 86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.9E-23 | 22 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-23 | 22 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.00E-17 | 27 | 119 | No hit | No description |
PROSITE profile | PS50863 | 13.352 | 28 | 121 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.2E-15 | 29 | 121 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-14 | 36 | 120 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-23 | 209 | 314 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-20 | 210 | 314 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.33E-17 | 215 | 313 | No hit | No description |
PROSITE profile | PS50863 | 13.07 | 216 | 315 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-14 | 216 | 314 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-9 | 217 | 315 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 325 aa Download sequence Send to blast |
XTQRPSYGGR GPMGDSSQQQ LFSSRTPHFF KIILEETLQA NMLRIPRKFI RKYWKTLSES 60 VLVRLPCGSK WNMKLKEKEG SIWLEKGWPE FAKHYSIKRG SMLIFKYVGY SEFYVVICDT 120 STAEIDYPYD NIDLQFQVPK KEAVKDDCVE ISYHFSPSSG AKTREKSSYL PCSRPQNKRI 180 RTTSPTAFKG RNSPYISLAE KNIILARVSF ESERPFFKAV MQPSYVKAEF FNVPQKFAYR 240 YLKDQGDAVL CVPNGKNWSV QLRTSILRHE YSISRLCCGW HKFVNDNKIE VGDVCIFELL 300 DGTEIAFQVH IVRRVVCEGL QWCKX |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5BZ41 | 1e-102 | A0A2P5BZ41_PARAD; B3 DNA binding domain containing protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 9e-32 | B3 family protein |