PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK18087.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRAS | ||||||||
Protein Properties | Length: 157aa MW: 18114.6 Da PI: 8.3644 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 141.9 | 6.7e-44 | 4 | 155 | 224 | 374 |
GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 ++++k+v++l+P v+vv+e ea+hns+ F++rf+eal +y a fd+le+ + re+e+r++ E ++g i+n+va eg++r+ rh t W++ +++ G PK18087.2 4 LESLVKVVRNLNPCVMVVTEIEANHNSPVFVNRFIEALFFYGAYFDCLENFMKREDENRMVCESLYFGTGIKNMVASEGKQRKIRHVTIDVWKAFFTRYG 103 56799*********************************************************************************************** PP GRAS 324 Fkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 Fk v+ls++ qakl+l+k++ ++ +++ + ++l+ gWk+ p++s+S+W+ PK18087.2 104 FKDVELSSSSLYQAKLILKKFScEHSCTLDLNGKCLIVGWKGTPILSLSVWK 155 **********************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 20.379 | 1 | 134 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-41 | 4 | 155 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
XDQLESLVKV VRNLNPCVMV VTEIEANHNS PVFVNRFIEA LFFYGAYFDC LENFMKREDE 60 NRMVCESLYF GTGIKNMVAS EGKQRKIRHV TIDVWKAFFT RYGFKDVELS SSSLYQAKLI 120 LKKFSCEHSC TLDLNGKCLI VGWKGTPILS LSVWKIX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-17 | 10 | 154 | 237 | 378 | Protein SCARECROW |
5b3h_A | 3e-17 | 10 | 154 | 236 | 377 | Protein SCARECROW |
5b3h_D | 3e-17 | 10 | 154 | 236 | 377 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024022283.1 | 3e-82 | DELLA protein RGL1 | ||||
TrEMBL | A0A2P5CVA3 | 3e-85 | A0A2P5CVA3_PARAD; GRAS transcription factor | ||||
STRING | XP_010097794.1 | 1e-81 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 1e-31 | RGA-like 2 |