PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK18087.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRAS | ||||||||
Protein Properties | Length: 175aa MW: 20348.2 Da PI: 5.0712 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 147.4 | 1.4e-45 | 2 | 172 | 159 | 333 |
GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258 eetgerL +fA+++++p++f+++++ +++ l+ + ++++ +E++aV ++++l +l+e+ +le+ ++k+v++l+P v+vv+e ea+hns+ F++rf+ PK18087.1 2 EETGERLLSFAKTMNIPLSFKIVMVPDMSHLKEDLFELDCNETVAVYSSYSLRIFLSEPDQLEH----LMKVVRNLNPCVMVVTEIEANHNSPVFVNRFI 97 79********************9999******************************88888888....******************************** PP GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 eal +y a fd+le + re+e+r++ ++g i+n+va eg++r+ rh t W++ +++ GFk v+ls++ PK18087.1 98 EALFFYGAYFDCLEDFMKREDENRMVCGSLYFGTGIKNMVASEGKQRKIRHVTIDVWKAFFTRYGFKDVELSSSS 172 ************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 25.929 | 1 | 175 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.8E-43 | 2 | 172 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
XEETGERLLS FAKTMNIPLS FKIVMVPDMS HLKEDLFELD CNETVAVYSS YSLRIFLSEP 60 DQLEHLMKVV RNLNPCVMVV TEIEANHNSP VFVNRFIEAL FFYGAYFDCL EDFMKREDEN 120 RMVCGSLYFG TGIKNMVASE GKQRKIRHVT IDVWKAFFTR YGFKDVELSS SSLYQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-14 | 4 | 175 | 163 | 335 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024022283.1 | 8e-86 | DELLA protein RGL1 | ||||
TrEMBL | A0A2P5CVA3 | 3e-93 | A0A2P5CVA3_PARAD; GRAS transcription factor | ||||
STRING | XP_010097794.1 | 3e-85 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17490.1 | 8e-31 | RGA-like protein 3 |