PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18038.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 397aa    MW: 43933.4 Da    PI: 8.2215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18038.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.7e-13325370655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  PK18038.1 325 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 370
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148319369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-16322386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.78E-12323372No hitNo description
Gene3DG3DSA:4.10.280.109.9E-15324382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-10325370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11325375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDSSHQQHQN HQPNSGLLRY RSAPSSLFVN FNDNNKNSFS MEGSESERLF SGFVNYSGSN  60
GSESCPPSFR DLDDKSSVMG GGQQNQRYNN SGLPPHYPRQ SSNMSSSVLD NGSFGLMGSM  120
AMDSHNTQPN KSLNSNLLRQ SSSPAGLFSH ISLPNGYATI KGSGNYGGLN NNNSNGTASQ  180
GEMSPPTNRL KSQLSFSPRI PSLGMLSQIS EVESENNLEA NTLDEENKLG NNNDNNTSDV  240
QFYGSGFSFG SWNDSSNFSD SYGGLRRDQD KNNEEMGNRI QLLSHHLSLP KSSAAEISME  300
KFLHFQDAVP CKVRAKRGCA THPRSIAERV RRTRISERMR KLQELVPNMD KQTNTADMLD  360
LAVEYIKDLQ KQFKTLSDKR ANCKCLNMQK AIPNQVI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899049.11e-180transcription factor bHLH130 isoform X1
TrEMBLA0A2P5F1I40.0A0A2P5F1I4_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010111430.11e-154(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-78bHLH family protein