PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK17974.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Protein Properties

Length: 262aa MW: 29912.3 Da PI: 8.7383

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK17974.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.2	2e-15	147	234	4	92
E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 4 vltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ++++s+++ + + +p+ fa+++ kk++ + +l ++g+sW+v +++ ++s++ ++ GWk F+ +n L++gD++ F+l+++ + e PK17974.2 147 IMKKSYATGQrNSQHIPRWFARTYICKKQC--EASLWVSNGESWSVHYKVIGGSKAAQFGHGWKAFAVDNSLEVGDICRFELTNSYGNEI 234 444555443337789*******666556..79999999***************************************987655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.377	1	40	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.8E-9	2	47	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.6E-10	3	51	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.08E-21	137	241	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.4E-21	137	242	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.97E-18	142	242	No hit	No description
SMART	SM01019	8.2E-7	144	244	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.153	145	244	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.4E-13	145	232	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
XWIEKGWNKF VQHCSISRGN ILVFGYEGNS EFHVIIFDKT TMEIDYSSNP NNFDKHNVVD 60 IDDDDSIEVL DSFPRYPKTR DKSPIPCSRP QKKMRSSVPV MQKGSLPSKV DKSTPKRYQK 120 PSPVYRNTTA LERAKLFESD YPFFAVIMKK SYATGQRNSQ HIPRWFARTY ICKKQCEASL 180 WVSNGESWSV HYKVIGGSKA AQFGHGWKAF AVDNSLEVGD ICRFELTNSY GNEISFRVSI 240 VKCDDDAYHD LAAEIAATPS KX

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF98	34	369

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-20	B3 family protein