PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17974.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 489aa    MW: 55763.9 Da    PI: 8.8709
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17974.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.6e-133791899
               --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
               +pk f  ++ g+   s ++ l+ + g +Wev l  +k+s++ ++++kGW++Fv+   +  g ++vF ++g+sef  +v +f+k
  PK17974.1  3 IPKAFWVKCCGS--LSSQVFLKLPCGSTWEVGL--TKSSDGkVWIEKGWNKFVQHCSISRGNILVFGYEGNSEF--HVIIFDK 79
               899999899444..4557***************..7777777****************************9999..**99998 PP
2B355.41.1e-17258344187
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                f+  + ps v++  r+ +p +fa+++ +k   s++++l+ ++gr W+vk+     +++s+   ++ GWk Fv++n+L++gD++ F l ++
  PK17974.1 258 FIVPMQPSVVGAGFRMNVPFHFARTYLSK---SQDVILKVQDGRNWSVKYFSrqyEGSSRYSRFECGWKAFVQDNELEVGDVCAFVLRNS 344
                6778999*******************544...568***************5544366666699**********************97654 PP
3B346.75.8e-15396487399
                EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                +v ++s +   + l++p +fa+++ +gk ++  t++l     +   vkl    +++ y + +GW  Fv++n L++gD+++F+l +  ++e++v++fr+
  PK17974.1 396 QVILRSTHVHGHVLYIPLSFARDYlEGK-TQ--TIVLW-VGEECCYVKL--LVNGSDYKFCGGWCAFVRDNSLQVGDVCIFELLKGYQAEMKVHIFRQ 487
                4555777777888***********6444.33..56654.5677788999..77777899***********************999999********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.267180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-16280IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-9379IPR003340B3 DNA binding domain
CDDcd100173.47E-10378No hitNo description
SMARTSM010190.21380IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-16379IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-21251356IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-20253344IPR015300DNA-binding pseudobarrel domain
CDDcd100172.89E-21256356No hitNo description
PfamPF023621.9E-15258346IPR003340B3 DNA binding domain
SMARTSM010192.1E-11258354IPR003340B3 DNA binding domain
PROSITE profilePS5086313.38258359IPR003340B3 DNA binding domain
SuperFamilySSF1019361.37E-22390488IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-22390488IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-17393486No hitNo description
PROSITE profilePS5086310.941394488IPR003340B3 DNA binding domain
PfamPF023625.8E-14395487IPR003340B3 DNA binding domain
SMARTSM010191.4E-8395488IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
QQIPKAFWVK CCGSLSSQVF LKLPCGSTWE VGLTKSSDGK VWIEKGWNKF VQHCSISRGN  60
ILVFGYEGNS EFHVIIFDKT TMEIDYSSNP NNFDKHNVVD IDDDDSIEVL DSFPRYPKTR  120
DKSPIPCSRP QKKMRSSVPV MQKGSLPSKV DKSTPKRYQK PSSEIEKHNV DDTKDDISIE  180
VLDKSPLPCS ARPHKKMKTS PCVKSEAKFD LSDEVCGESQ VLREVEPEKF IRKKCLSGKS  240
KAKALMRAKG FKSKDPFFIV PMQPSVVGAG FRMNVPFHFA RTYLSKSQDV ILKVQDGRNW  300
SVKYFSRQYE GSSRYSRFEC GWKAFVQDNE LEVGDVCAFV LRNSIDDITL FEVVIFYYDK  360
DKARMISQNS VAKKESGLSR ACEAANRFFS KNPYFQVILR STHVHGHVLY IPLSFARDYL  420
EGKTQTIVLW VGEECCYVKL LVNGSDYKFC GGWCAFVRDN SLQVGDVCIF ELLKGYQAEM  480
KVHIFRQTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1635748616141B3 domain-containing transcription factor VRN1
4i1k_B1e-1635748616141B3 domain-containing transcription factor VRN1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14300416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-29B3 family protein