PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK17954.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

GRAS

Protein Properties

Length: 596aa MW: 66302.1 Da PI: 6.2002

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK17954.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	328.4	1.4e-100	240	595	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l+++L ++Ae +++g+ laq +Larl++++sp g+p+qR+a+yf+eAL+ l++ +l+ + + + ++ a+k+fsevsP+l+f+++t+Nq PK17954.1 240 LIDQLSKAAELIETGNPVLAQGILARLNHHVSPLGKPFQRAAFYFKEALQLLLHN-------SLALPPFN---LIFKIGAYKTFSEVSPVLQFANFTCNQ 329 5789************************************************9.......56666665...89********************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.eleeLrvk 197 aIlea+eg +r+H+iDfdi++G+QW++++q+La R+++++ sl+iT+++sp+++++ el t+e+L++fA+e+++ fe +++ +++++ + L+++ PK17954.1 330 AILEALEGFSRIHVIDFDIGYGGQWASFMQELALRNASAAggSLKITAFVSPSTHEEFELGFTHENLKHFAAEINLAFELEIVSLETFNSGsWPVPLHIS 429 ********************************554445************************************97777766524789 PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 ++Ea+aVnl + + + ++sl+ vL+++++lsPkvvv e+ +d+++ +F +++++a++ ys l +sl+a + e+ +k+E++ll+++i+++ PK17954.1 430 EDEAIAVNLPITSLSSY--PLSLPL----VLRFLNQLSPKVVVSLERGSDRTDVPFPHQIIHAFHSYSGLIESLDAV-NVNLEALQKIEKFLLQPRIEKL 522 ******9766666..677776....*****************************************665.4566999*********** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 v ++ ++ et Wr+ + ++GF+p+ +s+++++qa++l+++++++g++ve+++ sl l+W++++L+svSaWr PK17954.1 523 VLNRYRS----PETTPPWRSSFLNSGFSPAVFSNFTESQAECLVQRTPVRGFHVEKKQSSLSLCWQRKELISVSAWR 595 *99....***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.959	214	575	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.7E-98	240	595	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0048768	Biological Process	root hair cell tip growth
GO:0051301	Biological Process	cell division

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence Send to blast
MEDWESVLAE SPGHDQSILR LMMADVDDPS LGLNRLLQSG SVSSSQEMEF NGGGFQVVDQ 60 GYENLMSSII DPPSLQGTTC SDFPFNSSSN SQNNNSLSPM FSTSANNLMP ASLSPLVFHQ 120 QQHQQQQLVH SVDANPQMVI NQNQPHLVMP LTYAQLQEHH VMSQPPAKRL NTGGVRSNYQ 180 LQKVQFPNSG QELFVRGQEQ QLQLFHQQRP TMAVSKQKML SPGAGAGDEL ANHHQLQQAL 240 IDQLSKAAEL IETGNPVLAQ GILARLNHHV SPLGKPFQRA AFYFKEALQL LLHNSLALPP 300 FNLIFKIGAY KTFSEVSPVL QFANFTCNQA ILEALEGFSR IHVIDFDIGY GGQWASFMQE 360 LALRNASAAG GSLKITAFVS PSTHEEFELG FTHENLKHFA AEINLAFELE IVSLETFNSG 420 SWPVPLHISE DEAIAVNLPI TSLSSYPLSL PLVLRFLNQL SPKVVVSLER GSDRTDVPFP 480 HQIIHAFHSY SGLIESLDAV NVNLEALQKI EKFLLQPRIE KLVLNRYRSP ETTPPWRSSF 540 LNSGFSPAVF SNFTESQAEC LVQRTPVRGF HVEKKQSSLS LCWQRKELIS VSAWRC

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence Send to blast

MEDWESVLAE SPGHDQSILR LMMADVDDPS LGLNRLLQSG SVSSSQEMEF NGGGFQVVDQ  60
GYENLMSSII DPPSLQGTTC SDFPFNSSSN SQNNNSLSPM FSTSANNLMP ASLSPLVFHQ  120
QQHQQQQLVH SVDANPQMVI NQNQPHLVMP LTYAQLQEHH VMSQPPAKRL NTGGVRSNYQ  180
LQKVQFPNSG QELFVRGQEQ QLQLFHQQRP TMAVSKQKML SPGAGAGDEL ANHHQLQQAL  240
IDQLSKAAEL IETGNPVLAQ GILARLNHHV SPLGKPFQRA AFYFKEALQL LLHNSLALPP  300
FNLIFKIGAY KTFSEVSPVL QFANFTCNQA ILEALEGFSR IHVIDFDIGY GGQWASFMQE  360
LALRNASAAG GSLKITAFVS PSTHEEFELG FTHENLKHFA AEINLAFELE IVSLETFNSG  420
SWPVPLHISE DEAIAVNLPI TSLSSYPLSL PLVLRFLNQL SPKVVVSLER GSDRTDVPFP  480
HQIIHAFHSY SGLIESLDAV NVNLEALQKI EKFLLQPRIE KLVLNRYRSP ETTPPWRSSF  540
LNSGFSPAVF SNFTESQAEC LVQRTPVRGF HVEKKQSSLS LCWQRKELIS VSAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-32	255	595	18	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015889409.1	0.0	scarecrow-like protein 6
Swissprot	O81316	1e-150	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A2P5EBN0	0.0	A0A2P5EBN0_TREOI; GRAS transcription factor
STRING	EMJ21441	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3183	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-141	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]