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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PK17916.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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| Family | C3H | ||||||||
| Protein Properties | Length: 305aa MW: 34464.4 Da PI: 10.3 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 20.6 | 7.8e-07 | 31 | 52 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26
++C +f+r G C +G++C+F+H+
PK17916.1 31 PECFDFLR-GKCIRGGSCRFMHP 52
67889***.*************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50103 | 12.934 | 27 | 54 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.2E-4 | 27 | 53 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.8E-5 | 31 | 52 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 305 aa Download sequence Send to blast |
RKRRSRSRSP QYRRAGEHAG EKLRSNRGRI PECFDFLRGK CIRGGSCRFM HPGVDKNDNS 60 RCSRRNKMNP EVSSNSKKDK RDDKTKKLLP ERMSRETQIQ VEQDEKVDWK YNDNFISSDL 120 VRCCSPGKVA DTLLEKQTIQ KKSAKTNPQI LDHRTFMESH QPSSIEILPS QFVSGTTNVN 180 PCDNTSHEVV ASVKTFIHQP HRNTSVAEVQ NTKYPSHRMD NSSVFDASPT NTSTISLKKF 240 SDSDFFPINI LPTQSLPNAI SRQSNLPESV ALPFTAPKVP SSPSQHQSPQ PPPPPSTYFG 300 PPNQX |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A2P5DB93 | 1e-71 | A0A2P5DB93_PARAD; Zinc finger, CCCH-type | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF7855 | 3 | 3 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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