PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK17889.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Trihelix

Protein Properties

Length: 408aa MW: 46015.7 Da PI: 5.1204

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK17889.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.5	2.4e-25	288	372	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ e+ aLi++r+ +e++++++++k+ Wee+s m + g++r++k+Ckekw+n+nk++kk + kkr s + +tcpyf++le PK17889.1 288 RWPEAEIEALIALRTGLERKFQTTESKGCIWEEISVGMCSMGYNRTAKKCKEKWDNMNKYFKKPYVSGKKR-SANGKTCPYFRSLE 372 8*************************************************************9999998.66677****998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.795	281	345	IPR017877	Myb-like domain
SMART	SM00717	0.006	285	347	IPR001005	SANT/Myb domain
Pfam	PF13837	4.8E-19	287	374	No hit	No description
CDD	cd12203	9.84E-27	287	350	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MEALAGDRLI PNSDDFPQLI APFPEPTEDL IYAHPKTLIH SPDIITHRPI SPPQKLRPIR 60 CHARSPVSDV RGKVGPAETL AKGVSGDHLE PLDGEFDCAV KFETQRDVAG NGGNVSVAVD 120 NPFQVGLGSF GENWEMNGVE RVVEDESSSS SDDEVNYSVE NCKGVVDQKR RKSKRNIEHF 180 LENMAMKVME KQEEMHNQLI DMIKKMESER ILREEAWKQI EVERMKRDEL VRTQETSRSL 240 ALISFLQNLL GEDIQIPEPV SQPFMEENRV GSSTDAQADT KCNTENKRWP EAEIEALIAL 300 RTGLERKFQT TESKGCIWEE ISVGMCSMGY NRTAKKCKEK WDNMNKYFKK PYVSGKKRSA 360 NGKTCPYFRS LESLYKNGAA NSGNSNSTPN NEDEVKCEKE SGESLYTG

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MEALAGDRLI PNSDDFPQLI APFPEPTEDL IYAHPKTLIH SPDIITHRPI SPPQKLRPIR  60
CHARSPVSDV RGKVGPAETL AKGVSGDHLE PLDGEFDCAV KFETQRDVAG NGGNVSVAVD  120
NPFQVGLGSF GENWEMNGVE RVVEDESSSS SDDEVNYSVE NCKGVVDQKR RKSKRNIEHF  180
LENMAMKVME KQEEMHNQLI DMIKKMESER ILREEAWKQI EVERMKRDEL VRTQETSRSL  240
ALISFLQNLL GEDIQIPEPV SQPFMEENRV GSSTDAQADT KCNTENKRWP EAEIEALIAL  300
RTGLERKFQT TESKGCIWEE ISVGMCSMGY NRTAKKCKEK WDNMNKYFKK PYVSGKKRSA  360
NGKTCPYFRS LESLYKNGAA NSGNSNSTPN NEDEVKCEKE SGESLYTG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00552	DAP	Transfer from AT5G47660	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010087663.1	1e-138	trihelix transcription factor GT-2
TrEMBL	A0A2P5EXN0	1e-172	A0A2P5EXN0_TREOI; Octamer-binding transcription factor
STRING	XP_010087663.1	1e-137	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11112	33	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	6e-54	Trihelix family protein