PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK17885.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRF | ||||||||
Protein Properties | Length: 163aa MW: 18590.9 Da PI: 9.8738 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.5 | 1.3e-24 | 71 | 114 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 +ep+rCrRtDGKkWRCs+++l+ +k+CErH+hrgr+rsrk +e+ PK17885.1 71 NEPWRCRRTDGKKWRCSKEALPHQKYCERHIHRGRHRSRKLVES 114 79***************************************987 PP | |||||||
2 | QLQ | 38 | 5.2e-14 | 8 | 41 | 3 | 36 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FT Ql++L Q+l+yKy+ a++ vP +L+q+i+ PK17885.1 8 FTILQLHELQLQALIYKYIEAGLAVPYHLVQPIW 41 7778*****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.6E-4 | 6 | 42 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.636 | 7 | 42 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.1E-11 | 8 | 41 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.525 | 70 | 114 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.7E-20 | 72 | 113 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
XSSSYHGFTI LQLHELQLQA LIYKYIEAGL AVPYHLVQPI WQSFSSTGLN NNGLGIVGPI 60 LCLDPRKGME NEPWRCRRTD GKKWRCSKEA LPHQKYCERH IHRGRHRSRK LVESSYTNSK 120 KTTMATATTT STTMTDLSIS LHVNENNATR STILFPSIDF QPN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024029096.1 | 2e-49 | growth-regulating factor 10 | ||||
Swissprot | Q6AWX7 | 4e-37 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | A0A2P5CSQ9 | 5e-68 | A0A2P5CSQ9_TREOI; Growth-regulating factor | ||||
STRING | POPTR_0001s08310.1 | 2e-46 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14195 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-31 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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