PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17827.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 263aa    MW: 31044.9 Da    PI: 8.2249
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17827.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-141562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd  l +++ ++G g W++++ + g+ R++k+c++rw++yl
        PK17827.1 15 KGAWSREEDTVLRECIDKYGEGKWHLVPLRAGLSRCRKSCRLRWLNYL 62
                     79********************************************97 PP
2Myb_DNA-binding482.9e-1568112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg + ++E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++
        PK17827.1  68 RGEFEEDEVDLLLRLHKLLGNR-WSLIAGRIP-GRTANDVKNYWNTH 112
                      7999******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3011062IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-211165IPR009057Homeodomain-like
SuperFamilySSF466892.81E-2712109IPR009057Homeodomain-like
SMARTSM007176.2E-131464IPR001005SANT/Myb domain
PfamPF002491.4E-131562IPR001005SANT/Myb domain
CDDcd001671.78E-81762No hitNo description
PROSITE profilePS5129424.01963117IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2366118IPR009057Homeodomain-like
SMARTSM007179.5E-1567115IPR001005SANT/Myb domain
PfamPF002494.2E-1468112IPR001005SANT/Myb domain
CDDcd001671.86E-588112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVRVLVKKSS LNVKKGAWSR EEDTVLRECI DKYGEGKWHL VPLRAGLSRC RKSCRLRWLN  60
YLKPDIKRGE FEEDEVDLLL RLHKLLGNRW SLIAGRIPGR TANDVKNYWN THQRKKMVII  120
NIDQSNKLNN NNNKDDKAWS NMVIKPRPTR IIRSQLSAMM NNNTQQPVID HDQTNNKNYC  180
WRELLNNNIT EDDDQIIQGY IEKPLINSGL ANNNHDHDHV VSECNDYYFR GNSTSDDQFV  240
NNDHDYHNFL TDFNINDIDM HLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22151177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264650.16e-66PREDICTED: transcription factor MYB75
RefseqXP_019182609.12e-65PREDICTED: transcription factor MYB75-like
SwissprotQ9FNV94e-58MY113_ARATH; Transcription factor MYB113
TrEMBLA4GRU74e-65A4GRU7_PETIN; Anthocyanin 2
STRINGVIT_02s0033g00400.t012e-65(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.11e-53myb domain protein 114
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]