PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK17763.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GATA | ||||||||
Protein Properties | Length: 339aa MW: 37161.8 Da PI: 6.5057 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54 | 2.2e-17 | 234 | 268 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kTp+WR gp g+ktLCnaCG++y++ +l PK17763.1 234 CLHCAAEKTPQWRTGPLGPKTLCNACGVRYKSGRL 268 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.4E-80 | 17 | 319 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 2.0E-15 | 228 | 278 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.281 | 228 | 264 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.2E-14 | 229 | 265 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.9E-14 | 229 | 291 | No hit | No description |
CDD | cd00202 | 1.96E-12 | 233 | 280 | No hit | No description |
Pfam | PF00320 | 4.6E-15 | 234 | 268 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 234 | 259 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MEVPEYLVGG YFGAGAVDFS NEKRLSEQKS SEHFTIDDLL DFSHEEPMVT DGFFDNVACN 60 NSTESSTVTA VDSCNSSISG GEHQFPGNRS FGDSQFSGDL CVPYEDLAEL EWLSNFVEDS 120 FSAEKELDTL QFLSTSSATV NNTKPPTSET SSSSETSRNA SFFQQETPLP GKARSKRSRA 180 APGDWTTRLL HLVTPNNNVD DGTKPVKTTP SKKKELAGGS CGSNGNSDSS GRKCLHCAAE 240 KTPQWRTGPL GPKTLCNACG VRYKSGRLVP EYRPAASPTF VSAKHSNSHR KVLELRRQKD 300 FHRAQHQHFL SQSSIFGVSN GGDDYLIHHH NGPDFRHMI |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00048 | PBM | Transfer from AT4G32890 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010098128.1 | 1e-178 | GATA transcription factor 9 | ||||
TrEMBL | A0A2P5BZX8 | 0.0 | A0A2P5BZX8_PARAD; GATA transcription factor | ||||
STRING | XP_010098128.1 | 1e-177 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1364 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 1e-74 | GATA transcription factor 9 |