PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17763.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GATA
Protein Properties Length: 339aa    MW: 37161.8 Da    PI: 6.5057
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17763.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA542.2e-17234268135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  PK17763.1 234 CLHCAAEKTPQWRTGPLGPKTLCNACGVRYKSGRL 268
                99*****************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.4E-8017319IPR016679Transcription factor, GATA, plant
SMARTSM004012.0E-15228278IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.281228264IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.2E-14229265IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.9E-14229291No hitNo description
CDDcd002021.96E-12233280No hitNo description
PfamPF003204.6E-15234268IPR000679Zinc finger, GATA-type
PROSITE patternPS003440234259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEVPEYLVGG YFGAGAVDFS NEKRLSEQKS SEHFTIDDLL DFSHEEPMVT DGFFDNVACN  60
NSTESSTVTA VDSCNSSISG GEHQFPGNRS FGDSQFSGDL CVPYEDLAEL EWLSNFVEDS  120
FSAEKELDTL QFLSTSSATV NNTKPPTSET SSSSETSRNA SFFQQETPLP GKARSKRSRA  180
APGDWTTRLL HLVTPNNNVD DGTKPVKTTP SKKKELAGGS CGSNGNSDSS GRKCLHCAAE  240
KTPQWRTGPL GPKTLCNACG VRYKSGRLVP EYRPAASPTF VSAKHSNSHR KVLELRRQKD  300
FHRAQHQHFL SQSSIFGVSN GGDDYLIHHH NGPDFRHMI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098128.11e-178GATA transcription factor 9
TrEMBLA0A2P5BZX80.0A0A2P5BZX8_PARAD; GATA transcription factor
STRINGXP_010098128.11e-177(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-74GATA transcription factor 9