PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17676.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family TCP
Protein Properties Length: 293aa    MW: 32854.1 Da    PI: 7.9384
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17676.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.69.6e-304103389
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssaseceaesssss 81 
                g+kdrhsk++T +g+RdRR+Rls+++a +++dLqd+LG+ ++sk i+WL+++ k  i++l+ +                     +               
  PK17676.1   4 GGKDRHSKVCTVRGLRDRRIRLSVPTAVQLYDLQDRLGLSQPSKVIDWLIEATKNDIDKLPPLqipqgslllsqfhhhhnhhetT--------------- 88 
                78*************************************************************3333333333222222222210............... PP

        TCP  82 asnsssg............k 89 
                      +            +
  PK17676.1  89 -----TTanhpammfenkdR 103
                .....111111111221110 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.914563IPR017887Transcription factor TCP subgroup
PfamPF036342.4E-255104IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
XTFGGKDRHS KVCTVRGLRD RRIRLSVPTA VQLYDLQDRL GLSQPSKVID WLIEATKNDI  60
DKLPPLQIPQ GSLLLSQFHH HHNHHETTTT ANHPAMMFEN KDRHHHDQDG GITQLFAQKF  120
FPLSSSSNNL SLNSTTHPLQ NGTMSFEPSN SNNNNLLSLS HPFGSINSSQ GFSLPQMDSS  180
SNTTGSHLFF CSPPNISNPY IFNPYPPPIY NSASSGIPVQ DFHHQYHTTT SYYNSLMPSL  240
LHNSTSTSSS TATNNNINNL SFRPSFHPAM FNPKLPSQSA LFQNRPDEKE DRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-201064155Putative transcription factor PCF6
5zkt_B5e-201064155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620849.11e-46PREDICTED: transcription factor TCP5
RefseqXP_009620850.11e-46PREDICTED: transcription factor TCP5
RefseqXP_016448638.15e-47PREDICTED: transcription factor TCP5-like, partial
TrEMBLA0A2P5DB914e-77A0A2P5DB91_PARAD; TCP transcription factor
STRINGXP_009620849.15e-46(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-40TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5