PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK17535.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | Trihelix | ||||||||
Protein Properties | Length: 227aa MW: 25783.7 Da PI: 9.7069 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 50.1 | 7e-16 | 20 | 110 | 2 | 72 |
trihelix 2 WtkqevlaLiearremeerlrrg.k...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt +e++ Liea++ ++er ++ + ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e+k + PK17535.1 20 WTVSETMILIEAKKMDDERRMKRiSgndneqarnsgsttptsnkPAELRWKWVEDYCWRKGCCRSQNQCNDKWDNLMRDYKKVRDYERKIA 110 *************95555544321123445555566666676669999***************************************9974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.377 | 12 | 96 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 5.4E-12 | 19 | 108 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MADQGTNTTT LIRDYRKGNW TVSETMILIE AKKMDDERRM KRISGNDNEQ ARNSGSTTPT 60 SNKPAELRWK WVEDYCWRKG CCRSQNQCND KWDNLMRDYK KVRDYERKIA GKSAASTVAG 120 GSGDQSYWKI EKNERKERNL PTNMLPQIYE ALVDVVEKKG QRVSGGISST GVPSISIPSS 180 SPSIGYQMVE RTMSSGVHHQ HHHHLQQTPL ISTSQAILMQ PHHISAX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024022806.1 | 4e-92 | uncharacterized protein LOC21408586 | ||||
TrEMBL | A0A2P5CN85 | 1e-105 | A0A2P5CN85_PARAD; Myb-like domain containing protein | ||||
STRING | XP_010098471.1 | 1e-91 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6804 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31310.1 | 4e-60 | Trihelix family protein |