PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17489.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 491aa    MW: 54684.4 Da    PI: 5.0652
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17489.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS156.81.9e-48532472181
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.........sseelaalkl......fse 86 
                ++lLl+cA a++ +d +laq++++ l++ as+ gdp+qRl++ f++AL +r +r +++++ + ++++t++++         s++ ++   +      +++
  PK17489.1  53 EKLLLHCASALERNDVTLAQQVMWVLNNVASSVGDPNQRLTSWFLKALISRASRICPSTSTTTTTTPTTTTStdmsngvvqSTRLMS---VtelagrYVD 149
                689***************************************************999999888666666555567667553223333...2446999*** PP

       GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl 181
                + P+++f++ + N+ I +a++g ++vHi+Df+i++++QWp+L++aLa+Rpegppsl+iT+ +   ++    + + +e+g rLa+f +  +vpfefnv+
  PK17489.1 150 LIPWHRFGYCASNSLIFKAIQGYNKVHILDFSITYCMQWPTLIDALAKRPEGPPSLKITVPSFRPPVpplLNISSHEVGLRLANFSKFREVPFEFNVI 247
                ***********************************************************9888666677999999*********************96 PP
2GRAS150.71.3e-46282477175373
       GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                +f+f++l    l+ l+ ++L+++ +Eal+Vn++  l +l+d++ + ++  rd++L+++k+l+P++vvvv++++d+n++s+  r++ +++y +  fd+le+
  PK17489.1 282 TFQFELL----LTHLNASSLNLQDDEALVVNFQNWLRYLPDNNDNNSNsLRDSFLNTIKGLNPRIVVVVDEDSDLNASSLSSRITTCFNYLWIPFDALET 377
                6999998....999**************************9877766669************************************************** PP

       GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                 lp++s +r+ +E   +g +i+n++  eg++r+er e+ ++ ++r+++aGF ++p++e++ k++k+ll +++ ++g++ eee++ lvl+Wk+++ v+ +a
  PK17489.1 378 FLPKDSCQRMEYESD-IGHKIQNIIGFEGFQRIERLESGATLSQRMRNAGFLSIPFGEDTIKEVKALLDEHAsGWGMKKEEEDHMLVLTWKGHSSVFSTA 476
                ***************.********************************************************9*************************** PP

       GRAS 373 W 373
                W
  PK17489.1 477 W 477
                * PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.70126457IPR005202Transcription factor GRAS
PfamPF035146.7E-4653247IPR005202Transcription factor GRAS
PfamPF035144.6E-44282477IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MKTELRGSTS TTSVSLQSPN HTNNVFINST PQGSLAGAAL RGCLGSLDGD CIEKLLLHCA  60
SALERNDVTL AQQVMWVLNN VASSVGDPNQ RLTSWFLKAL ISRASRICPS TSTTTTTTPT  120
TTTSTDMSNG VVQSTRLMSV TELAGRYVDL IPWHRFGYCA SNSLIFKAIQ GYNKVHILDF  180
SITYCMQWPT LIDALAKRPE GPPSLKITVP SFRPPVPPLL NISSHEVGLR LANFSKFREV  240
PFEFNVIGNV IHSSSSPPNY YNSSPVENTT SHHDNEEYNS STFQFELLLT HLNASSLNLQ  300
DDEALVVNFQ NWLRYLPDNN DNNSNSLRDS FLNTIKGLNP RIVVVVDEDS DLNASSLSSR  360
ITTCFNYLWI PFDALETFLP KDSCQRMEYE SDIGHKIQNI IGFEGFQRIE RLESGATLSQ  420
RMRNAGFLSI PFGEDTIKEV KALLDEHASG WGMKKEEEDH MLVLTWKGHS SVFSTAWVPI  480
ITNLDADDED D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-535347934420Protein SHORT-ROOT
5b3h_E1e-535347934420Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109563.10.0scarecrow-like protein 32
TrEMBLA0A2P5EAV00.0A0A2P5EAV0_TREOI; GRAS transcription factor
STRINGXP_010109563.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-108GRAS family protein