PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK17306.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Trihelix

Protein Properties

Length: 306aa MW: 34663.2 Da PI: 9.7255

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK17306.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.5	5.4e-21	6	96	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W+++e+ aLi+ +r+++ +lrrg+lk+++W+ev++++ + ++++qC++k+e+l+kry+ + +++++ s+ +s++++f++++ PK17306.1 6 CWSHDETVALIDSYRDKWYSLRRGNLKATHWQEVADAVsarcPSASPAKTAVQCRHKMEKLRKRYRTELQRARSMpVSRFTSSWVHFKRMD 96 8******************************99999666566677899********************97799*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.6E-22	5	98	No hit	No description
SMART	SM00595	1.0E-11	14	103	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
XLPPPCWSHD ETVALIDSYR DKWYSLRRGN LKATHWQEVA DAVSARCPSA SPAKTAVQCR 60 HKMEKLRKRY RTELQRARSM PVSRFTSSWV HFKRMDSMEK GPTAKPENSD SPGEDEDHED 120 EEEDPDQQLY EELKYGSNMK SMSKLYRNGI GGSGGGGGGS SSSGFRIRIP TGVSIAQPGT 180 KVYAKLDPKF GMIHQNSMNS GPNFGTKVVR ECNSVRPGLG KREREREKEK DPVTEMVSAI 240 KALGDGFVRM EQMKMEMARE IETMRMEMEM KRTEMILDSQ QRIVEAFAKA VSEKKKKVKR 300 MPSPEA

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149129	3e-46	AC149129.3 Medicago truncatula chromosome 7 clone mth2-139m18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009375369.1	1e-155	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A2P5FPU0	1e-179	A0A2P5FPU0_TREOI; MADF domain containing protein
STRING	XP_009375369.1	1e-155	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4638	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	5e-72	Trihelix family protein