PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17145.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C2H2
Protein Properties Length: 511aa    MW: 57121.4 Da    PI: 9.5203
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17145.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.2e-064769123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C++C++ F r  nL+ H r+H
  PK17145.1 47 YVCEICNQGFQRDQNLQMHRRRH 69
               9*********************9 PP
2zf-C2H213.10.00028126148123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+k +  +s++k H++t+
  PK17145.1 126 WVCQRCSKAYAVHSDFKAHLKTC 148
                58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.36E-54470No hitNo description
Gene3DG3DSA:3.30.160.602.1E-54669IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.974769IPR007087Zinc finger, C2H2
SMARTSM003550.00524769IPR015880Zinc finger, C2H2-like
PROSITE patternPS01359049131IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
SMARTSM0035519090120IPR015880Zinc finger, C2H2-like
SMARTSM00355100126153IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MENNINSNII GSSNNNNKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE ICNQGFQRDQ  60
NLQMHRRRHK VPWKLLKRET PAGVVRKRVF VCPEPTCLHH DPCHALGDLV GIKKHFRRKH  120
SNHKQWVCQR CSKAYAVHSD FKAHLKTCGT RGHSCDCGRV FSRVESFIEH QDACTMGRLR  180
SESHTLQPAA CLSRTASSPS PSSTDTNLAV PINTTTTSSI NNINPSETTT TTTTAPALVI  240
LTSSSTRSPT QNPILSKTTS TPNPRFHNLD LQLSTTTVSN PENHPILLSP NNKTDPNSTH  300
DREINHQYST QLQLSIGSSD FGGEKNHNSN NNNVESNANN NNNNHKNSPR ESMMSSTTTT  360
NTTVEKTRLM KEEAREQLRV AMAEKCYAEE ARQQAKRQIE LAEKEFANAK RIRQQAQSEL  420
DKAQALKEHA MKQLNSTLLQ LTCHACKHHF HNNSNTNNNS NARTTLSYII ASTTSSDCAQ  480
TLDNNDRNTT HLFARSDNHR LGKSATINNP S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-17122174355Zinc finger protein JACKDAW
5b3h_F8e-17122174355Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209918.10.0protein SHOOT GRAVITROPISM 5
TrEMBLA0A2P5BDU00.0A0A2P5BDU0_TREOI; TFIIH C1-like domain containing protein
STRINGEMJ111170.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-109C2H2-like zinc finger protein