PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17114.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 1109aa    MW: 124751 Da    PI: 9.4925
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17114.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.29.3e-094681340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++ E e++++a +++G++ Wk++a+ +  +R+ +++
        PK17114.1 46 QWSKRELERFYEAYRKYGKD-WKKVASAIR-NRSSEMV 81
                     6*****************99.*********.**98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-94189IPR009057Homeodomain-like
PROSITE profilePS512939.3994295IPR017884SANT domain
SMARTSM007173.6E-44391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-44681IPR009057Homeodomain-like
PfamPF002492.4E-74681IPR001005SANT/Myb domain
CDDcd001674.42E-64781No hitNo description
SMARTSM011353.2E-48588689IPR033471DIRP domain
PfamPF065841.4E-29588688IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1109 aa     Download sequence    Send to blast
MAPSRKSRNG NKQLSNVIEV SPNKHGEPIN RSRLKKRKLS DMLGPQWSKR ELERFYEAYR  60
KYGKDWKKVA SAIRNRSSEM VEALYSMNRA YLSLPEGTAS VAGLVAMMTD HYCVLGVSDS  120
DEESNETGGE FQEPQKGTRG RSHNSTNKGS DRTLPDLSHF HSAASHNGGL PMLKKRRTGI  180
IPHTVRKRTP RIDVSNADKD SRDVNNDGVH KLAMVLTEAS QRSGSPHASW RPNRKLEGGS  240
PSPHQDGGRM CARPEMSSGQ LQYAKVDDRA SGFSIGNTET NNKDCEIPRN HLMGRKGAGT  300
ENGQKKGKNY FLKKLDDKDK VSDQLDDIEE DYIGTEKQKL SAKGRIQTEV VNVKSPRSIT  360
KDSRKRSRNS LYEGDEGSPF DALVTLATTS LMMREETADT VCDVEDTNSR ASKLGKSKGG  420
APEFNAGIEK SKQKFFPSKL QPHENELQVD LCQSDNQRIE INDKAKRFMC KGKRSSYPSS  480
LPRKLAKPLD LTYSESSVKG KVNDSVLSTR EVHPANQLNI PTKARSRRKM NKQRPFITED  540
VNKTEKVLDD RPNLHISLFR NGSQSLKEKL STCLHQYQAR RWCAFEWFYS AIDYPWFAKS  600
EFVEYLIHVG LGHVTRLTRV EWGVIRSSLG RPRRFSEQFL KEEKEKLNEY RESVRAHYAE  660
LRAGTREGLS TDLARPLSVQ QRVISIHPRT REIQDGTVLT VDDSRYHIQF DRPDLGVEYV  720
MDIDCMPLNP MENLPSSFTR HNFIVNNCFE TFNVCKINKQ PKEGKSDEHT KAVSVGNVDN  780
TGNHYASPST HDICEGLRQK EGYASRSDLQ AKLVSYKTTT PQNKANSQSS PLAQIRAKEA  840
DIQAISELTV ALDKKEAVVF MLRCMNDDVL EKEKNGDSSL KNSETFKKHY AAVLLQFDEV  900
NKQVSSALLA LRKRNTYSGF SPLASLNDPD GRLSSADFCS HNIQECGSQV AEIIDTSKMK  960
ARKIAGKAMQ VMSSLEKMGK SFKSSEEAVV FVQNQLSDED LELDMPSTRS STTYRDKAKV  1020
HLEQSPATST PSATCHALDP SELIISCLAT ILMVKRCTER PIPPAEIARV LDYALTTVQP  1080
RCSQNRFAYE EIQMLMGIIR TKIFALVPT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892701.10.0protein ALWAYS EARLY 3 isoform X2
TrEMBLA0A2P5ERY70.0A0A2P5ERY7_TREOI; Protein LIN-9/Protein ALWAYS EARLY
STRINGXP_008223159.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding