PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17007.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ARF
Protein Properties Length: 697aa    MW: 76476.2 Da    PI: 7.1831
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17007.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.3e-23120221199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +++ l+
  PK17007.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldynADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAENGDLC 215
                89****************************996445444..8999*********************************************..4488999* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+++r+
  PK17007.1 216 VGIRRA 221
                ***997 PP
2Auxin_resp110.61.6e-36289372183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ as++++FevvY+Prast+eF+vk++ v++al++++++GmRfkmafetedss++++ +Gt+++v+ +d  rWp+S+Wr+L+
   PK17007.1 289 AATLASNGQPFEVVYYPRASTPEFCVKASLVRAALQIRWTPGMRFKMAFETEDSSRISWfMGTISSVQVSDYHRWPDSPWRLLQ 372
                 6899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-37111224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.98E-29114224IPR015300DNA-binding pseudobarrel domain
CDDcd100173.69E-21119220No hitNo description
PROSITE profilePS5086313.197120222IPR003340B3 DNA binding domain
PfamPF023621.3E-21120221IPR003340B3 DNA binding domain
SMARTSM010191.8E-21120222IPR003340B3 DNA binding domain
PfamPF065077.1E-32289372IPR010525Auxin response factor
PROSITE profilePS5174520.481605685IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MDSKEKLKEV EKCLDPQLWH ACAGGMVQMP MVNAKVFYFP QGHAEHACGP VDFSKILRIS  60
SFTLCKVSSI KFMADPETDE VFAKLRLIPS SAGVNELGFD DDGIGGGLNG SEAQEKPASF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNADPPVQTI LAKDVHGETW KFRHIYRGTP  180
RRHLLTTGWS TFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKRGMGGGTE SSSGWNPTGG  240
NCASPYGGFA AFLRDEENKM LRNGNGNGTN SNGSLMGKGK VRPESVIEAA TLASNGQPFE  300
VVYYPRASTP EFCVKASLVR AALQIRWTPG MRFKMAFETE DSSRISWFMG TISSVQVSDY  360
HRWPDSPWRL LQVSWDEPDL LQNVKRVSPW LVELVSNMPA IHLSPFSPPR KKLRLPQHSD  420
FPLDTHIPMP SFTGNLFGHS NNFSCLSENT PAGMQGARQA HFGLSLSDLH FNKLQPSLFQ  480
AGFPPFDHGA APAKFPNNAM NQKPLSLNEN VSCLLTMSHT AQTPKKSTND VKTPQLILFG  540
QPILTEQQIS LSCSGDTVSP VLTGNSSSDG NGDKAANFSD ASGQQRRSPC EGLQWNKETE  600
PNLETGHCKV FMESEDVGRT LDLSVLGSYN ELYRKLADMF GIENSETLSH ALYRDGTGAV  660
KHIGDEPFSE FTKTARRLTI LMDSGSDNVG HVKTDKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-751439351388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107532.20.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2P5FV550.0A0A2P5FV55_TREOI; Auxin response factor
STRINGXP_010107532.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]