PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16925.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 519aa    MW: 59546.4 Da    PI: 7.9618
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16925.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.63e-1527112899
                -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 d+l+++ l +p  f++++g+    + t+ ++ + g +W++k+  +++sg+++l+kG +eF k   +  g +++F++dg+se   +v +f++
  PK16925.1  27 RDTLEENKLGIPHYFVKKCGET--LTETVYIKLPCGSKWQMKI--ENCSGKFWLQKGFSEFMKHYSIGRGYVLTFRYDGNSEL--YVAIFDT 112
                68899999***********955..7889***************..********************************997666..9*99987 PP
2B353.44.6e-17232316286
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                fkv +++++ ++grl +  +fa++h +k  +  +++l+  +++  W+v++++ + ++++   l +GW+ Fv++n+Lk+gD++ F l++
  PK16925.1 232 FKVVMQPYYIRKGRLHIEHQFAKNHLNKRYC--DVILKVpKENDAWRVRYSFgE-CKKAsPRLLRGWSAFVRDNNLKVGDVCAFVLVD 316
                899*******************888655444..79999945559********62.4444466778*******************9875 PP
3B337.54.4e-124074951098
                HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
         B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                ++  +  ++p + a++h ++  +  ++tl  ++gr W+ +++     + ++ + v+ +GWkeF   n+Lk  D++vF+l ++ +e +++++++r
  PK16925.1 407 NTWYA--CVPLDIADKHIKN-DC--DVTLSIPNGRFWSAQFRRrkcyTTGKTEAVICTGWKEFMAKNDLKLDDVCVFQLRHNgTEISFHISIVR 495
                44444..6788889888433.24..79999***********66333333344488889********************9987677777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-1916112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1917112IPR015300DNA-binding pseudobarrel domain
CDDcd100174.38E-1220111No hitNo description
PROSITE profilePS5086310.91220113IPR003340B3 DNA binding domain
SMARTSM010191.2E-1021113IPR003340B3 DNA binding domain
PfamPF023623.0E-1227112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-21224325IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-19227326IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-14231316IPR003340B3 DNA binding domain
PROSITE profilePS5086313.366231328IPR003340B3 DNA binding domain
CDDcd100179.72E-17231317No hitNo description
SMARTSM010198.0E-11231328IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-14391495IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-15392495IPR015300DNA-binding pseudobarrel domain
CDDcd100175.15E-12397495No hitNo description
PfamPF023628.3E-10398493IPR003340B3 DNA binding domain
SMARTSM010193.3E-4399497IPR003340B3 DNA binding domain
PROSITE profilePS5086310.659428497IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MPSDPSEESE KPIFLSKSSH FYKIILRDTL EENKLGIPHY FVKKCGETLT ETVYIKLPCG  60
SKWQMKIENC SGKFWLQKGF SEFMKHYSIG RGYVLTFRYD GNSELYVAIF DTTTMEIDYS  120
SFPAHFDKSN NGEKLQIPKK EVIDDDDDSI EILDDIYPCD NSGVTSPSAQ SPKRIKTSPT  180
GKLDSPFESD QVQSTTPRKT NNGIPRTIPL VNSEKYEALQ RTSDFKSEHP YFKVVMQPYY  240
IRKGRLHIEH QFAKNHLNKR YCDVILKVPK ENDAWRVRYS FGECKKASPR LLRGWSAFVR  300
DNNLKVGDVC AFVLVDAVNI SFEVVRLDPE RSSNSHMSTA HHESETPSFH NFSPAIQVKG  360
CNSSQNSKPP LFGEQHLSAF NERVKFYENA AFESGNPFFK IVIERSNTWY ACVPLDIADK  420
HIKNDCDVTL SIPNGRFWSA QFRRRKCYTT GKTEAVICTG WKEFMAKNDL KLDDVCVFQL  480
RHNGTEISFH ISIVRVGSAA VVADDELKCQ KPQVKYDYF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5BZ571e-157A0A2P5BZ57_PARAD; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-33B3 family protein