PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16897.10
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family YABBY
Protein Properties Length: 113aa    MW: 12846.1 Da    PI: 9.2427
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16897.10genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY47.76.1e-1587112142167
       YABBY 142 asnPdishreafsaaaknWahfPkih 167
                 + nPdishre fsaaaknWahfP+ih
  PK16897.10  87 SLNPDISHREGFSAAAKNWAHFPHIH 112
                 46************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.8805.2E-13163IPR029062Class I glutamine amidotransferase-like
PfamPF001171.3E-61375IPR017926Glutamine amidotransferase
PfamPF046901.4E-1288112IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
RVGSRRTYFQ VMDCKSSKLY GNKSYIDERH PHRYEVNPEL VRCLEKGGLC FTGKDITGRR  60
METPGEETES SLGIQSVSSR MRSNASSLNP DISHREGFSA AAKNWAHFPH IHX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5u03_A6e-16163449511CTP synthase 1
5u03_B6e-16163449511CTP synthase 1
5u03_C6e-16163449511CTP synthase 1
5u03_D6e-16163449511CTP synthase 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1468791e-33BT146879.1 Lotus japonicus clone JCVI-FLLj-2N22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087074.19e-29CTP synthase-like isoform X1
RefseqXP_027087075.19e-29CTP synthase-like isoform X1
RefseqXP_027089068.19e-29CTP synthase-like isoform X1
RefseqXP_027089069.19e-29CTP synthase-like isoform X1
SwissprotP706981e-16PYRG1_MOUSE; CTP synthase 1
TrEMBLA0A2C9UB211e-26A0A2C9UB21_MANES; CTP synthase
TrEMBLB9SLW21e-26B9SLW2_RICCO; Ctp synthase, putative
STRINGcassava4.1_004029m2e-27(Manihot esculenta)
STRINGXP_002526981.12e-27(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.18e-12YABBY family protein