PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK16683.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

TCP

Protein Properties

Length: 465aa MW: 52745 Da PI: 7.1641

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK16683.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.9	1.8e-34	171	325	2	131
TCP 2 agkkdrhski..hTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssaseceaessss 80 ++kkdrhski +T + +R RR+Rls+++a++fFdLqd+LG+ ++skt+eWLl qa p+ik+l++ +s ++s+c PK16683.1 171 TAKKDRHSKImmSTGKRPRHRRMRLSLDVARQFFDLQDMLGYERASKTVEWLLIQARPEIKKLARKtsttttlaaglekiansstNSGTNSDC------- 263 689****93346677999******************************************666655555555555443333333444....... PP TCP 81 sasnsssg.................kaaksaa.kskksqksaasalnlakesrakarararertrekmr 131 + k+ +++ k+++ +++ l+ +esr kar+rarert++k++ PK16683.1 264 -------EvvsgldevavvdhgdtsKSLVNKEtKKRQIVSRPRWGLKRPRESRDKARERARERTKQKHM 325 .......1444444444444444435555555477777777776777777**************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.3E-36	171	325	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.395	173	233	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.703	306	323	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
XNTWNIGNDL ISFSHDQSLI PNTSKPCLLS DIVVNTNTST PNSKQPFFYF PSSPLFEDEN 60 LFLHNNQNNY DGLLLLPHLN NTTTTTTTTT NILSTSSTDK AAHVGVSAEP NNNNNEDPMN 120 LTNDLHHHHN HQKEDLSELR KNHITRYDGD GDDDDNNDGD QQKLIPRKKM TAKKDRHSKI 180 MMSTGKRPRH RRMRLSLDVA RQFFDLQDML GYERASKTVE WLLIQARPEI KKLARKTSTT 240 TTLAAGLEKI ANSSTNSGTN SDCEVVSGLD EVAVVDHGDT SKSLVNKETK KRQIVSRPRW 300 GLKRPRESRD KARERARERT KQKHMRGKRA LLAAVVDHHC QHGNNQDLIS HGLRTSWSLE 360 TGEEESGTHS GQNINSFEGL VLQANYHEFE EPLTTWHHNG HQEQYRNTCT PAALPNLADE 420 CSFLNVGKCY WSSSPIFNYL QTTATSESTG SIPQEHQFQD FQFFS

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

XNTWNIGNDL ISFSHDQSLI PNTSKPCLLS DIVVNTNTST PNSKQPFFYF PSSPLFEDEN  60
LFLHNNQNNY DGLLLLPHLN NTTTTTTTTT NILSTSSTDK AAHVGVSAEP NNNNNEDPMN  120
LTNDLHHHHN HQKEDLSELR KNHITRYDGD GDDDDNNDGD QQKLIPRKKM TAKKDRHSKI  180
MMSTGKRPRH RRMRLSLDVA RQFFDLQDML GYERASKTVE WLLIQARPEI KKLARKTSTT  240
TTLAAGLEKI ANSSTNSGTN SDCEVVSGLD EVAVVDHGDT SKSLVNKETK KRQIVSRPRW  300
GLKRPRESRD KARERARERT KQKHMRGKRA LLAAVVDHHC QHGNNQDLIS HGLRTSWSLE  360
TGEEESGTHS GQNINSFEGL VLQANYHEFE EPLTTWHHNG HQEQYRNTCT PAALPNLADE  420
CSFLNVGKCY WSSSPIFNYL QTTATSESTG SIPQEHQFQD FQFFS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5ELU0	1e-136	A0A2P5ELU0_TREOI; TCP transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6564	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.2	2e-25	TCP family protein