PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK16670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | bHLH | ||||||||
Protein Properties | Length: 426aa MW: 47561.2 Da PI: 6.8439 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.7 | 5.6e-10 | 265 | 312 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq PK16670.1 265 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 312 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.70E-10 | 259 | 316 | No hit | No description |
SuperFamily | SSF47459 | 6.28E-17 | 259 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-17 | 261 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.618 | 261 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-7 | 265 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-9 | 267 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MKGALPEMLQ YCLNPSVNLS GNCTELTVLE RQRARLKWQE EQRHQQLQQS SYFRGSELGG 60 MFFQANDHDQ LHNFQVHSFK DLAVHRSVNH DPRFKNEWPE PEKFNIPLLE NVSLSSSSGF 120 VSDSINPSPG FQMNGAISRT YSCPPIVAVG AETAEVKDKE IVLPVGKFCS SGGKQTFKKR 180 KTDQTQKSEK AGEDDESRDK RVKGSAEDGD SKITEQNSTK YVSCNANNRD QSSSGDTSKE 240 NSKASEVQKP DYIHVRARRG QATDSHSLAE RVRREKISER MKYLQDLVPG CNKITGKAGM 300 LDEIINYVQS LQRQVEFLSM KLAAVNPRLD FNIDDNLFAK EIFPSSTAGF ETLGINGMSA 360 EMSNSAYLEF NNQGQQVVSS SGLEMAMNFP DMSCLKRTTS APVSIPHQFL DTSCYTVNTS 420 IPSHLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024030235.1 | 1e-155 | transcription factor bHLH63 isoform X1 | ||||
Swissprot | Q8GY61 | 7e-61 | BH063_ARATH; Transcription factor bHLH63 | ||||
TrEMBL | A0A2P5EKJ1 | 0.0 | A0A2P5EKJ1_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010088933.1 | 1e-151 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3618 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 7e-63 | cryptochrome-interacting basic-helix-loop-helix 1 |