PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16496.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family TALE
Protein Properties Length: 694aa    MW: 76797.9 Da    PI: 7.0432
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16496.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-094394761954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+++++  LAk++gLt +qV++WF N R +
  PK16496.1 439 FEHflHPYPKTADKVMLAKQTGLTRSQVSNWFINARVR 476
                554459******************************88 PP
2BELL117.56.5e-38300371172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                +rqelq kkakL s+l+eV++rY+qy++q+++vissFe+++g+gsak+Yt+lAlk+iS++FrcLkdai+ qi
  PK16496.1 300 QRQELQVKKAKLASMLDEVEQRYRQYHQQMNVVISSFEQAVGYGSAKSYTALALKTISKQFRCLKDAISAQI 371
                69********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.6E-55199369IPR006563POX domain
PfamPF075264.4E-46205368IPR006563POX domain
PROSITE profilePS5007112.179417480IPR001356Homeobox domain
SMARTSM003895.0E-10420484IPR001356Homeobox domain
CDDcd000862.32E-12420481No hitNo description
SuperFamilySSF466894.06E-17421487IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-28423486IPR009057Homeodomain-like
PfamPF059204.9E-18437476IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MATYFNHGSS EIQGPDGLHT LYLMNPNNNN NNNNYVQTYS DTTTTSQPPP PPAPNMFFLN  60
PNQLHHSRHL AGVPISAATA SPGPGSNNEA DISAFPHLQY NIWGSNMDHH QRNTTPDFAT  120
QMGFRRHQVV SPTTQQQQAL SLSLSSTHPA QAAAYVASSS FSGGDINNEV VIPTVLPTSF  180
GNSLSSTIVS NNSGIGTSLG QVQSMLLGSK YLKAAQELLD EVVNVGNNNN NFKSREKEEK  240
DNTAIDSSVN CSTVGGLGSK DKAAMKSNGE RTPTPELGGS RNSGGESSSS KISAELSTVQ  300
RQELQVKKAK LASMLDEVEQ RYRQYHQQMN VVISSFEQAV GYGSAKSYTA LALKTISKQF  360
RCLKDAISAQ IKATSKTLGE EECLGVKIEG SRLRFVDHHL RQQRALQQLG MMPQHNNNAW  420
RPQRGLPERA VSVLRAWLFE HFLHPYPKTA DKVMLAKQTG LTRSQVSNWF INARVRLWKP  480
MVEEMYIEET KSHEDQLKGT TTNKIDTIKE STTRVQENST ADIDDDDNID HDDHNRSNIN  540
PFQYSSKNQS SSSADQMLMS SSFSTSTPKK PMRSSSITHD EMIMKGIITD HDHQYNRTDH  600
NINNINIDVG FGRSSSTYPI GFGTYPVGDL ARFHSRDHHH HHEFMAPSLY HGNNNGSVSL  660
TLGLPHCDQN HSLSSENAQQ SFLSNPQNID PLFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15426484563Homeobox protein Meis2
3k2a_B1e-15426484563Homeobox protein Meis2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2035925e-56KT203592.1 Cannabis sativa clone 11-M2 microsatellite D02CANN1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089795.10.0BEL1-like homeodomain protein 1
RefseqXP_024017018.10.0BEL1-like homeodomain protein 1
RefseqXP_024017019.10.0BEL1-like homeodomain protein 1
RefseqXP_024017020.10.0BEL1-like homeodomain protein 1
TrEMBLA0A2P5FUB90.0A0A2P5FUB9_TREOI; Homeodomain transcription factor
STRINGXP_010089795.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3220522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.37e-96BEL1-like homeodomain 1