PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK16488.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 85aa MW: 10193 Da PI: 11.4578 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 3 | 47 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ PK16488.1 3 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 47 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.073 | 1 | 52 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-13 | 2 | 53 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 2 | 51 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 2 | 50 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 3 | 47 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.30E-9 | 7 | 48 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
XKRGQITPHE ESIILELHAR WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK KQAKVTSDAS 60 EKAKARLLKR QQFHQQQLHQ QQQQX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021807006.1 | 3e-39 | myb-related protein 305-like | ||||
Swissprot | Q4JL76 | 1e-24 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | A0A2P5FAR5 | 5e-40 | A0A2P5FAR5_TREOI; MYB transcription factor | ||||
TrEMBL | A0A314XFW1 | 4e-40 | A0A314XFW1_PRUYE; Myb-related protein 305 | ||||
STRING | XP_010095222.1 | 2e-39 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 5e-37 | myb domain protein 79 |
Publications ? help Back to Top | |||
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