PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16424.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB
Protein Properties Length: 326aa    MW: 36352.4 Da    PI: 7.4298
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16424.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++++ ++G+g +W + ++++g++R++k+c++rw++yl
        PK16424.1 14 KGPWSPEEDAKLKEYIDKYGTGgNWIALPQKVGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding44.53.6e-1469111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd +++++++  G++ W+ Ia+ ++ gRt++++k++w++
        PK16424.1  69 GEFSEEEDNIIINLFANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.066962IPR017930Myb domain
SuperFamilySSF466896.13E-2811109IPR009057Homeodomain-like
SMARTSM007176.2E-131364IPR001005SANT/Myb domain
PfamPF002498.4E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-241569IPR009057Homeodomain-like
CDDcd001671.69E-91662No hitNo description
PROSITE profilePS5129423.45763117IPR017930Myb domain
SMARTSM007172.6E-1367115IPR001005SANT/Myb domain
PfamPF002494.6E-1369111IPR001005SANT/Myb domain
CDDcd001671.25E-970113No hitNo description
Gene3DG3DSA:1.10.10.607.3E-2570117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009785Biological Processblue light signaling pathway
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYID KYGTGGNWIA LPQKVGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSEEEDNIII NLFANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMSI  120
INPTTQGLLL RKPPHHHQPS TISSLLQHSS STSTSSSSSS PSSLICTSQT GSFTGFEQPI  180
SSFSPTTTIL NQESYLTQMP PHYQVNRESF QQLMFSNGGG EASCSSSDGS NSFYYNNNNG  240
VKQENQEVVM MMSNENSNNN TTINNVNVNG SGLWGSSSEQ APLEYFGLEE IKQLISTSSN  300
TNNTISCSNF LFDESKTAEE RVLYYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101625.11e-109transcription factor RAX2
TrEMBLA0A2P5BJT71e-132A0A2P5BJT7_PARAD; MYB transcription factor
STRINGXP_010101625.11e-108(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-78MYB family protein