PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK16276.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | C2H2 | ||||||||
Protein Properties | Length: 150aa MW: 16651.4 Da PI: 7.371 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.001 | 63 | 86 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C +Cg + s k + ++Hi t H PK16276.1 63 YFCDYCGICRSKKALITSHILTdH 86 78******************9988 PP | |||||||
2 | zf-C2H2 | 21.7 | 5.2e-07 | 110 | 131 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cg +F+ +Lk+H+ +H PK16276.1 110 TCEKCGLTFKKAAYLKQHMLSH 131 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.87E-6 | 61 | 131 | No hit | No description |
SMART | SM00355 | 33 | 63 | 86 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 0.019 | 109 | 131 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.305 | 109 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 110 | 134 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 111 | 131 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
XSSLSSIVFT LTSGPFSIFV LLSVDSLSSI GANSSSLTLS RFYQSEMDEA KEDKPIFRDI 60 RRYFCDYCGI CRSKKALITS HILTDHKDEL DKVRAGGDNS TEGLKESKNT CEKCGLTFKK 120 AAYLKQHMLS HSTEIRISVN CLLSLDDGVX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104482.1 | 9e-34 | transcription factor IIIA | ||||
Refseq | XP_015867533.1 | 7e-34 | transcription factor IIIA isoform X1 | ||||
Refseq | XP_023920458.1 | 1e-33 | transcription factor IIIA isoform X1 | ||||
Refseq | XP_024924686.1 | 7e-34 | transcription factor IIIA isoform X1 | ||||
Refseq | XP_024924687.1 | 7e-34 | transcription factor IIIA isoform X2 | ||||
Swissprot | Q84MZ4 | 2e-16 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A2P5CW95 | 1e-37 | A0A2P5CW95_PARAD; TFIIH C1-like domain containing protein | ||||
STRING | XP_008222684.1 | 2e-33 | (Prunus mume) | ||||
STRING | XP_010104482.1 | 3e-33 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3069 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-18 | transcription factor IIIA |