PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16227.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family G2-like
Protein Properties Length: 455aa    MW: 50865.3 Da    PI: 5.8451
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16227.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.81.1e-32228282155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k r+rWt+eLHe+Fveav+ LGG+e+AtPk il+lmkv+gLt++hvkSHLQkYR+
  PK16227.1 228 KSRMRWTQELHEAFVEAVNTLGGNERATPKGILNLMKVPGLTIYHVKSHLQKYRT 282
                68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.838225285IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-30226284IPR009057Homeodomain-like
SuperFamilySSF466895.2E-18226282IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-24228282IPR006447Myb domain, plants
PfamPF002491.4E-9230281IPR001005SANT/Myb domain
PfamPF143791.3E-17313359IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MSLSFPVGST PIEDKYTKLP DTYQVSSQRK IMMNSSIRQG PSLSSSAGSN ERFFSSPSRL  60
PSDVQDPISS VSPHERHSLH SLVPQSSGGM PPIHSPLSEG QSTTFIDHIT ENNDIAWCPN  120
SIHDLLDFPG MVSVPNDQVE SSTVAARSQD HNQKNDWPDW QMISISDDLD QLWPDLPISR  180
NRTDSKPEVC IQSVDASVQQ IQNYQQPSLQ CGEHATTPDP LCNASSTKSR MRWTQELHEA  240
FVEAVNTLGG NERATPKGIL NLMKVPGLTI YHVKSHLQKY RTARYKPELS EGITGKKSPT  300
AEDVRSQELN TSMGITEALR LQVELQKRLH EQLEHQRKLQ LQIEEQGKYP EKMFDQHKKM  360
ETKYKASSST SHDNKNSLSN TAPHSSENNK SKISEVDLLE KGISSSNAKS NPDVSFIDPS  420
EKEKAYDETE TCKENSDVPP TKRDDVNEWN SSGIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-29228286260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-29228286260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-29228286260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-29228286260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-29228286260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-29228286260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-29228286260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-29228286260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102208.11e-180protein PHR1-LIKE 1 isoform X2
TrEMBLA0A2P5A6T30.0A0A2P5A6T3_TREOI; Octamer-binding transcription factor
STRINGXP_010102208.11e-180(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.27e-75G2-like family protein