PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK16189.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

MYB_related

Protein Properties

Length: 587aa MW: 66803.4 Da PI: 6.4063

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK16189.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.4	2.1e-10	436	484	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+eE +lv++v q G g+W+ I r + +Rt ++k++w+++l PK16189.1 436 SWTPEEVVKLVEGVSQCGVGRWTEIKRLLFsssSHRTSVDLKDKWRNLL 484 5**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.7E-13	427	488	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.091	429	488	IPR017930	Myb domain
SMART	SM00717	6.1E-11	433	486	IPR001005	SANT/Myb domain
Pfam	PF00249	5.4E-8	436	484	IPR001005	SANT/Myb domain
CDD	cd11660	9.18E-19	437	485	No hit	No description
SuperFamily	SSF46689	6.68E-16	437	490	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
MFSCKPYEVD SDMPIFADEP VGLEHFLVEP LRKEDWVGDL LDLDAFQIEK CFNMEDISGT 60 FDYDQNQIKL DADTVHPMSP KGSEKNSELS SDKFQDVNTK VHEEYHIDTT LTDKACNFDY 120 GNCKEMGTGG VENQFQGFHR SGSGNKMADL SSTNTPVLEY GNNHHSSLLD QGRAKELHDT 180 YNMSGREPFM EKGWPKKDNL YDFSDYAELD SSMNLVKVEE TSNVNEGETT FSSLVVYSGS 240 VTGHVTRLLH DERSSENQQM KRKRVDGCES LKTSASAVKV EMCSLDEGDQ AGLLVSPKRA 300 RKPPKRYIEE SLNYDSRSHH RKCGIGRKLK DRILHDGYQK YKWHQKEFHA EVFEDDSFNG 360 GCIQVPFGLP MEKEHSKKNK YILGSESTKD NGLVDQNEKH DTERYSVDSQ DEISEDECVL 420 RSSTQKANTR RKRHISWTPE EVVKLVEGVS QCGVGRWTEI KRLLFSSSSH RTSVDLKDKW 480 RNLLRASCTQ LHIKEKVEQS RKQASSNYVP DSILCRVREL AVVYPYPREN RSKDSCTVPA 540 VSSFSTGSSN ALVPLSTVAK EQRKSARVVL EQHLQHTSRP HGYTMLT

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

MFSCKPYEVD SDMPIFADEP VGLEHFLVEP LRKEDWVGDL LDLDAFQIEK CFNMEDISGT  60
FDYDQNQIKL DADTVHPMSP KGSEKNSELS SDKFQDVNTK VHEEYHIDTT LTDKACNFDY  120
GNCKEMGTGG VENQFQGFHR SGSGNKMADL SSTNTPVLEY GNNHHSSLLD QGRAKELHDT  180
YNMSGREPFM EKGWPKKDNL YDFSDYAELD SSMNLVKVEE TSNVNEGETT FSSLVVYSGS  240
VTGHVTRLLH DERSSENQQM KRKRVDGCES LKTSASAVKV EMCSLDEGDQ AGLLVSPKRA  300
RKPPKRYIEE SLNYDSRSHH RKCGIGRKLK DRILHDGYQK YKWHQKEFHA EVFEDDSFNG  360
GCIQVPFGLP MEKEHSKKNK YILGSESTKD NGLVDQNEKH DTERYSVDSQ DEISEDECVL  420
RSSTQKANTR RKRHISWTPE EVVKLVEGVS QCGVGRWTEI KRLLFSSSSH RTSVDLKDKW  480
RNLLRASCTQ LHIKEKVEQS RKQASSNYVP DSILCRVREL AVVYPYPREN RSKDSCTVPA  540
VSSFSTGSSN ALVPLSTVAK EQRKSARVVL EQHLQHTSRP HGYTMLT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024029955.1	0.0	uncharacterized protein LOC21390901
Refseq	XP_024029956.1	0.0	uncharacterized protein LOC21390901
TrEMBL	A0A2P5FTS4	0.0	A0A2P5FTS4_TREOI; Octamer-binding transcription factor
STRING	XP_010109483.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15018	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	3e-24	TRF-like 6