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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PK16012.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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| Family | B3 | ||||||||
| Protein Properties | Length: 115aa MW: 13243.6 Da PI: 10.4178 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 42.2 | 1.4e-13 | 35 | 114 | 1 | 73 |
EEEE-..-HHHHT..T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT CS
B3 1 ffkvltpsdvlks..grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkang 73
f+ + ps+v+++ +lv+p f+++h +++ ++++++l+ ++gr+W+ k+ + + s+++ +++GWk Fv++n+
PK16012.1 35 FIVPMQPSSVGSKsrYNLVIPSFFVKKHlFSISSGPQDVILTVQDGRTWSAKYYVhvrpHGISSTFRIESGWKAFVQDND 114
677889999999955458***********66677999****************5578666666669************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.40.330.10 | 4.4E-14 | 28 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 2.16E-13 | 30 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.96E-15 | 33 | 114 | No hit | No description |
| Pfam | PF02362 | 2.6E-11 | 35 | 114 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 10.207 | 37 | 115 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 115 aa Download sequence Send to blast |
XPVPEKFIRN QKLSRKEKAE AFQRAIDFKS EDPFFIVPMQ PSSVGSKSRY NLVIPSFFVK 60 KHLFSISSGP QDVILTVQDG RTWSAKYYVH VRPHGISSTF RIESGWKAFV QDNDX |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A2P5BZ38 | 4e-22 | A0A2P5BZ38_PARAD; B3 DNA binding domain containing protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF14300 | 4 | 16 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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