PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15857.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family TALE
Protein Properties Length: 318aa    MW: 35137.3 Da    PI: 5.6267
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15857.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox246.6e-082673002154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp++e++++L +++gL+ +q+ +WF N+R +
  PK15857.1 267 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 300
                469*****************************87 PP
2ELK29.31.9e-10221242122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKh+L+++Y+++++++++E++
  PK15857.1 221 ELKHELKQGYKEKIVDIREEIL 242
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.6E-2056100IPR005540KNOX1
PfamPF037901.4E-175999IPR005540KNOX1
SMARTSM012561.5E-28109164IPR005541KNOX2
PfamPF037915.7E-21114163IPR005541KNOX2
PROSITE profilePS512139.969221241IPR005539ELK domain
PfamPF037896.9E-7221242IPR005539ELK domain
SMARTSM011886.1E-4221242IPR005539ELK domain
PROSITE profilePS5007111.726241304IPR001356Homeobox domain
SMARTSM003894.7E-11243308IPR001356Homeobox domain
SuperFamilySSF466892.91E-16243307IPR009057Homeodomain-like
CDDcd000869.44E-12244305No hitNo description
Gene3DG3DSA:1.10.10.602.8E-25248305IPR009057Homeodomain-like
PfamPF059208.0E-18261300IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
AAGDSMIGGG AMSHDSAEMK GGGENSNLNK SEQGVVVESG GGGGGDGGGV INWQNARNKA  60
EIISHPLYDQ LLSAHVACLR IATPVDQLPR IDAQLDQSQN VVAKYSALSQ GLVVDDKELD  120
QFMTHYVLLL CSFKEQLQQH VRVHAMEAVM ACWEIEQSLQ SLTGVSPGEG TGATMSDDDD  180
DQVDSDANLF DGSLDGPDSM GFGPLIPTES ERSLMERVRQ ELKHELKQGY KEKIVDIREE  240
ILRKRRAGKL PGDTTSVLKA WWQSHSKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR  300
NWHSNPSTST VLKSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12244308872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297317RKRNWHSNPSTSTVLKSKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458839.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X2
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2P5DDC50.0A0A2P5DDC5_PARAD; Knotted-like homeobox transcription factor
TrEMBLF5A6B50.0F5A6B5_FRAVE; Knotted-like homeobox KNOX5
STRINGXP_004290929.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-177KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]